barSeed - Barley Seed Development Database

Probe CUST_10277_PI390587928

Source Contig U35_42776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10277_PI390587928	Hv_44K_v2	TACTTTTATTGGCTAGCCGTTGGAGGCTAGCGTACCAGGGTCTACTTTTTGGTCAAAAAA	527	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.551	2.199	2.439	0.953	0.265	0.254
Raw	488.357	1161.034	1059.164	666.608	63.969	68.215

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68312.1	2279	9e-22	1726 - 1780	100	55 / 55	plus	ABC38657
JLOC1	JLOC1_45187.1	2176	5e-22	1720 - 1774	100	55 / 55	plus
Harvest21	ABC38657	598	3e-25	528 - 587	100	60 / 60	plus	ABC38657
Harvest35	U35_42776	598	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_42776 598 Hv_44K_v2
GGGCTCCCCTACATCCAGTGCATCGTCAAGGAGACGCTGCGCATGCACCCGCCGGGCCCG
CTCCTCTCATGGGCGCGGCTGGCCGTGCACGACGCGCACGTCGGCGGCCACCTCGTGCCG
GCCGGCACGACGGCGATGGTGAACATGTGGGCCATCGCGCACGACGCGGCGGTGTGGCCC
GAGCCGGAGCTGTTCCGGCCGGAGCGGTTCATGGAGGAGGACGTGAGCGTGCTGGGCAGC
GACCTCCGCCTGGCCCCGTTCGGCGCCGGGCGGCGCGTGTGCCCCGGGAAGATGCTGGCC
CTCGCCACCGTCCACCTCTGGCTCGCGCAGCTGCTTCACCGGTTCGAGTGGGCTCCCTCG
GGGAGCGTCGACCTGTCAGAGCGCCTCAAGATGTCACTGGAGATGGCCACGCCGCTGGTC
TGCAAGGCCGTCGCTCGCTAGGGCCAGAGCTGCATGCTGCCGCCGCCGTCTACGTTACCT
AGCCTGTCGGCGGCGGCGCCAGCGCCAGCGTTACTTGCTTTATTGCCTACTTTTATTGGC
TAGCCGTTGGAGGCTAGCGTACCAGGGTCTACTTTTTGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_42776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41240.1	526	1e-82	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi4g35890.1	537	2e-58
Arabidopsis v10	AT1G13710.1	517	3e-69	\| Symbols: CYP78A5, KLU \| cytochrome P450, family 78, subfamily A, polypeptide 5 \| chr1:4702932-4704592 REVERSE LENGTH=517