barSeed - Barley Seed Development Database

Probe CUST_10263_PI390587928

Source Contig U35_42785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10263_PI390587928	Hv_44K_v2	ACTACACAATCCACAAGGTTATGCAAGGGCTTCTTGATCAGTATACGGTGGCTGGAAACT	114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354432	2906	2e-24	863 - 922	100	60 / 60	plus	ABC14301
MLOC	MLOC_22348.3	1661	2e-24	1138 - 1197	100	60 / 60	minus	None
MLOC	MLOC_22348.2	1538	2e-24	1043 - 1102	100	60 / 60	minus	None
MLOC	MLOC_22348.1	1499	2e-24	971 - 1030	100	60 / 60	minus	None
JLOC1	JLOC1_15494.1	1503	8e-25	474 - 533	100	60 / 60	plus
Harvest21	ABC38673	240	3e-25	133 - 192	100	60 / 60	plus
Harvest35	U35_42785	240	3e-25	115 - 174	100	60 / 60	plus

Contig Sequence (240 bp)

>U35_42785 240 Hv_44K_v2
CAGTCGTCGACGTGCTATACGACTGCCAGAATAAGATGGGCACAGGGTACCTGTCAGCCT
TCCCATCAGAGTTCTTCGACCGCGCTGAAGCCCTCACCACTGTCTGGGCTCCTTACTACA
CAATCCACAAGGTTATGCAAGGGCTTCTTGATCAGTATACGGTGGCTGGAAACTCCAAGG
CCCTTGAGATGGTTGTTGGGATGGCTAACTACTTCAGGGACCGGGTGAAGAATATCATTC

Homology of Contig U35_42785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None