- Probe CUST_10261_PI390587928
- Source Contig U35_28493
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10261_PI390587928 | Hv_44K_v2 | TTTGAGTATGGACGAGATCATAGATGAGTGCAAGACATTCTTCTTTGCCGGGCATGACAC | 477 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.536 | 2.599 | 1.104 | 0.842 | 0.296 | 0.475 |
| Raw | 58.213 | 161.399 | 54.176 | 72.116 | 8.031 | 14.091 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364622 | 1821 | 2e-24 | 1055 - 1114 | 100 | 60 / 60 | plus | ABC03045 ABC03047 |
| MLOC | MLOC_23018.2 | 1233 | 2e-24 | 643 - 702 | 100 | 60 / 60 | minus | ABC03045 ABC03047 |
| MLOC | MLOC_23018.1 | 1532 | 2e-24 | 700 - 759 | 100 | 60 / 60 | minus | ABC03045 ABC03047 |
| JLOC1 | JLOC1_15919.1 | 1429 | 8e-25 | 663 - 722 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27392 | 728 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03046 | 1129 | 3e-25 | 1047 - 1106 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03045 | 1319 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | ABC03045 |
| Harvest35 | U35_28493 | 728 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13700 | 1830 | 3e-25 | 1047 - 1106 | 100 | 60 / 60 | plus |
Contig Sequence (728 bp)
>U35_28493 728 Hv_44K_v2 GCGAAGAGGACAAGGGCGGCAGCGTGGAGATTGACCTCAGCACCCAGTTTGAGGAGATAA CCGCGGATGTATCTCTCACACGGCATTCGGAAGCAGCTACGAACAGGGGAAAAAGGTCTT CCTGGCGCAGAGGGAGCTTCAGTTCCTCGCCTTCTCCACCGTATTCAGTGTCCAAATCCC AGCATTCAGGTAAATGCAAGCTCCTCTTCTTCTTGTGCCGTTGTCGGTTTAATTTAAATC AGCATACAACACATGTTTTCGCACAGCTGAAATTAATCTCTGTGTATTTGTGGAATTATT CAGGTACCTTCCAACTGAAAAGAACCTCAAGATATGGAAGCTTGACAAGGAGGTGAGGAC CATGCTGATGAACATCATCGAAAGCCGTCTTGCCACCAAAGACACCATGGGCTACGGCAA CGACCTGCTCGGGCTCATGCTGGAGGCGTGCGCGGCAGAGGGTGGCCATACTCCGATTTT GAGTATGGACGAGATCATAGATGAGTGCAAGACATTCTTCTTTGCCGGGCATGACACCAG CTCGCACCTCCTCACATGGACCATGTTCTTGCTGAGCACGCACCCTGAGTGGCAGGAGAA GCTCAGGGAGGAGGTGCTAAGAGAGTGTGGCAGTGAGGTTCCCACCGGCGACATGCTCAA CAAGCTGCACTTGGTCAACATGTTCCTACTGGAAACTCTCAGGCTATACGCCCCTGTATC ACTCATTC
Homology of Contig U35_28493 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g23570.1 | 520 | 1e-88 | protein|cytochrome P450 72A1, putative, expressed |
| Brachypodium v1_2 | Bradi1g20260.1 | 519 | 1e-96 | |
| Arabidopsis v10 | None |