barSeed - Barley Seed Development Database

Probe CUST_10258_PI390587928

Source Contig U35_42788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10258_PI390587928	Hv_44K_v2	CCTGTTGGTTCTTTCAGCATGCCACCATATACAGGACAACCTCCTCACATGAATTTTATG	426	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.552	1.508	1.471	0.660	0.468	0.323
Raw	52.760	38.552	41.688	24.961	7.177	4.926

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359819	2999	2e-24	1264 - 1323	100	60 / 60	plus	ABC14607
MLOC	MLOC_10055.3	1847	2e-24	374 - 433	100	60 / 60	plus	ABC14607
MLOC	MLOC_10055.1	2769	2e-24	1361 - 1420	100	60 / 60	plus	ABC14607
MLOC	MLOC_10055.2	3182	2e-24	1293 - 1352	100	60 / 60	plus	ABC14607
JLOC1	JLOC1_6556.1	3015	8e-25	1293 - 1352	100	60 / 60	plus
Harvest21	ABC38676	486	3e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_42788	486	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_42788 486 Hv_44K_v2
GAGGAAACTGGAGCTAAAATACGAGTTTACGGGACTAACAAAGGCAGTGGTGAAAAGGCT
GAGGTTCCCCAGCCAGATGTACATGAAGCACAAGCTGCTTATGAGGACATATACATACAT
GTGTCAGCTGACTCTTATGACAAAGTTGATGCTGCAGTTGCGTTGATTGAGATGCTTCTT
ACTCCTGTCTCAGTACATTCAACAGATACTTCAGAAACAGCTGTTGTTTCTTCGGCAGTT
ACCTCTAGTGGTGTAAACCCAGCTGATATGCAACAGGGGCAGAGCACCACTTCTCAGCCT
GTCTTATTTCAGTACCAATCACGCAGTTCTCATTGGCTTTCCATTTCTCAAACCAGTGCT
CCATCAATTTCTTCCTCAGGGCCTACACCGAGCCCATTACCCAACAATTNATTGCAGCTG
CAACCTCCTGTTGGTTCTTTCAGCATGCCACCATATACAGGACAACCTCCTCACATGAAT
TTTATG

Homology of Contig U35_42788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None