barSeed - Barley Seed Development Database

Probe CUST_10251_PI390587928

Source Contig U35_42793

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10251_PI390587928	Hv_44K_v2	AAATCCAGTCGTTTATGTATGCCAAATGGCCAACGAATTCCATCAGTTTCATCCCAAGGG	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79980.1	480	7e-23	421 - 480	98	59 / 60	plus	ABC18943 ABC38688
JLOC1	JLOC1_53255.2	1862	4e-23	1579 - 1638	98	59 / 60	plus
JLOC1	JLOC1_53255.1	1677	4e-23	1394 - 1453	98	59 / 60	plus
Harvest21	ABC38688	486	3e-25	29 - 88	100	60 / 60	minus	ABC38688
Harvest35	U35_42793	486	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (486 bp)

>U35_42793 486 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAATCCCCAACCCTTGGGATGAAACTGATGGAATTCGTTGGC
CATTTGGCATACATAAACGACTGGATTTGTTGCGACTTTCACTTTGCTCCCAAAATACAC
AAAGTCCAAATCGAAAATGGGGCTAGACCATGTTGTATCCACTTTGTTTAAAACTGGTGC
TTTTAACAAATACAGCAGGAATGGCAGGATTTGGGAGCATTAGGGGACAAACACAACTTT
ACACAAGCCAGGAACAGGGCGACATTTATTTTTCAGCGACAAAAAAGGTTAACTAAGCCA
GACTACCAGGGGGGATTTACAAGATCCGCAGCAAAGCATTGTTTACACCGATAAAAATGC
ATTTCCCAGCAAATGTTCCAACGTCCCAGGGCACATGCTGTTTATTTGGGCCGTTGTTTT
CCGTAAGGCGCCACCGCAAGGGGTATTTTTTTCCTGGGGCCCATAGGTACTCCCATATTT
TTGAGG

Homology of Contig U35_42793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None