barSeed - Barley Seed Development Database

Probe CUST_10246_PI390587928

Source Contig U35_42799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10246_PI390587928	Hv_44K_v2	TGCAATGGACGCTTAAATATTGGCATAGCTCATTTGACACACTTGTTTCTATCACAGGTG	440	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.567	0.288	0.869	1.056	0.897	1.918
Raw	14.843	10.486	32.090	56.164	17.777	42.126

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC38703	684	3e-25	441 - 500	100	60 / 60	plus
Harvest35	U35_42799	684	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_42799 684 Hv_44K_v2
GGTTTAGCAGAAGTTAGGCGATCAAGGAGGCTCACGGTGTCATTTATCTGCACAGTTGCC
AACTATGAATATGGTTTTTACTGGCACTTTTACCAGGATGGTAAGATAGAAGCTGAAGTT
AAACTTACTGGAATTCTGAGTTTGGGAGCTCTGATGCCTGGGGAATCAAGGAAATATGGC
ACAACTATTGCTCCTAGTCTATATGCACCTGTTCACCAGCATTTCTTTGTTGCCCGTATG
GACATGGCTGTTGATTGCAAACCTAACGAGGCTCATAATCAGGTGGGTCCCTATACAAGC
TTTTTTATTATTATCAAAATGCCCATTTGAAACTGGTGCAAGAACAGGACCACTGCATGC
ATCTGCCAGATGGAAGTTGATTGCTAGCTTCACGCCTTTTGACTGTACCCGCCTTGTAGA
ATAACTTTGTATTCCTTTTGTGCAATGGACGCTTAAATATTGGCATAGCTCATTTGACAC
ACTTGTTTCTATCACAGGTGGTTGAAGTAAATGTCAACGTCGAAAGTGCAGGCACAAATA
ATGTGCATAACAATGCTTTCTATGCTGAAGAAAAAATACTGAAATCTGAGTTGCAAGCAA
TGAGAGATTGTGACCCTTCATCTGCGCGACATTGGATTGTTAGGAACACGAGGGCTGTAA
ATCGTACCGGACAACCAACTGGTT

Homology of Contig U35_42799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40040.1	839	1e-57	protein\|copper methylamine oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g13350.4	714	3e-58
Arabidopsis v10	AT2G42490.1	776	6e-54	Copper amine oxidase family protein \| chr2:17691600-17695526 REVERSE LENGTH=776