barSeed - Barley Seed Development Database

Probe CUST_10237_PI390587928

Source Contig U35_1708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10237_PI390587928	Hv_44K_v2	TACTCGATTATCATTTCGGTCCATCCATTCAATAAAGTCTCCACGTAGCTTCTCAAAAAA	1088	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.722	5.423	2.327	0.373	0.521	0.453
Raw	50.401	127.667	43.534	9.756	3.715	3.011

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9816.1	595	3e-22	523 - 578	100	56 / 56	plus	ABC06477
JLOC1	JLOC1_6367.1	571	1e-22	510 - 565	100	56 / 56	plus
Harvest21	ABC06477	651	2e-22	12 - 66	100	55 / 55	minus	ABC06477
Harvest35	U35_1708	1161	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_1708 1161 Hv_44K_v2
CCGGTCCGGAATTCCTTTTTACTGGTGGCCTACAGACTGCTCCAGAGCGCCGATCAAGAG
TCACCAGACTGAAAATGGCGCTCCTCCCGCTGCTCCTCGCGGCCCTCATCGTCTCCTGCT
CCGCTCAGCAGCCACCGATGCAGCCGCCGCCAACACCCAACGCGCCGCCTGCCGGCAACC
CGCCTCCTGCCCCCAACGCTCCTCCGGCCGGCAACCCGCCTCCAGCTCCCACCGCGCCCC
CGGCCGCCAACCCGCCTCCAGCGCCCAACGCTCCTCCGGCACAAATGACGCCTCCTCTGG
CGCCACAGGCCCCGGCCACGCCCCCTCCGGCGCCGCAGGCTCCCGCCACCCCTCCTCCGG
CTCCCACAAGTCCGCCGGCCACCCCTCCACCTGCTCCCACCACCCCGCCTCCGGCTCCCC
CGACGCAGCCTCCGCCCGCTCCCACCACCCCGCCGCCGTCGCCCCTGGCCACCCCGCCTC
CAGCACCCGCCACCCCGCCGCCATCACCGCCCATGTCTCCACCGCCCGCCACGCCTCCTC
CGATGGCGACCCCGCCCCCGTCGATGGCGCCCACGACCGCCCCGACCATCGCCCCGACGA
CATCCCCCACCGCGACGCCCTCCATGTCTCCGACCAGCCCGAAGACGCCCTCCCCAATGG
GCTCAACATCTCCGTCCACATCCCCCGTGCTCGCGCCCGGAGGCGCGCCGGTGACCGACA
GCAGCAGCGCATCCACAGCGCGCGCGGCCGGCGTCGCGGCGCTGGTGGCCTTGGCGAGCG
CGGGCCTCGCCGTCTTCCTCTGAGCAGTAGGCCAGTGCATGCTGTGTCCTCCTTCCCGCG
CGTCGCTGCTGCTTTTTTCTTCTTTCGTGTCGTCATTTAATTTTACCGGTGGTACTACGA
TCGATCGATTCTTGATGTACGATGATGCATTGGTTGTCCGTCCCGTCCCGTTTTTCTTTT
GATGATCGGCGGGTAGTGGTTGGTTTAGTGCATGTTCTGCTTCCGCTCTGTACTGTACGT
GAATTACCGCTCCATTTTGGTTATATAGAGAGAGGATTTTGTGTAAAAAAAAAAAAAAAA
ATTCGGTGTACTCGATTATCATTTCGGTCCATCCATTCAATAAAGTCTCCACGTAGCTTC
TCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None