barSeed - Barley Seed Development Database

Probe CUST_10236_PI390587928

Source Contig U35_1709

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10236_PI390587928	Hv_44K_v2	GAGATGATCCTCATCTGCCAGAATCTCCGCAACAACCTGCAGCACCCCAATGAGTACATC	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7183.2	3370	2e-24	523 - 582	100	60 / 60	plus	ABC04534 ABC04535
MLOC	MLOC_7183.3	2148	2e-24	505 - 564	100	60 / 60	plus	ABC04535
MLOC	MLOC_7183.1	3820	2e-24	662 - 721	100	60 / 60	plus	ABC04534 ABC04535
JLOC1	JLOC1_4738.1	3706	8e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_1709	577	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_1709 577 Hv_44K_v2
TCGAGCACTGTTGGCCTACATACAACTATTTTTCAGTTGGCATCTCGCCTCTTCGCTCCT
GTCAACCACTCCCCCCCTCTTCCGGCTCCCAGATCTCGATCCACCTCCGCCGCAGATCCA
ACCACCGATACCCCACACGCCGTCGCCCTCCGGCGCGGGTGCACGGCAGATCCGGCGCCA
TGGACAAGCCGTGCACGCTGCTAGTCCACTTCGACAAGGGCTCCGCCGCCATGGCGAATG
AGATCAAGGCGGATCTGGAGGGCAGCGACGTCGCCGCCAAGGTCGAGGCCATGAAGCGCG
CCGTCATGCTCCTCCTCAATGGCGAGACCCTGCCGACGCTCTTCATCACCGTCGTCCGCT
ACGTCCTCCCCTCCGAGGACCACACCATCCAGAAGTTGTTGCTCCTCTACCTCGAGATCA
TTGACAAGCGCGATGCCGCTGGCCGCGTCCTCCCGGAGATGATCCTCATCTGCCAGAATC
TCCGCAACAACCTGCAGCACCCCAATGAGTACATCCGCGGCGTCACGCTGCGGTTCCTCT
GCCGCCTCTCCGAGCCGGAGGTGCTTGAGCCGCTCGT

Homology of Contig U35_1709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17430.1	951	8e-76	protein\|coatomer subunit beta-1, putative, expressed
Brachypodium v1_2	Bradi2g10950.1	951	3e-80
Arabidopsis v10	AT4G31490.1	948	2e-65	Coatomer, beta subunit \| chr4:15269460-15272693 FORWARD LENGTH=948