barSeed - Barley Seed Development Database

Probe CUST_10235_PI390587928

Source Contig U35_1711

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10235_PI390587928	Hv_44K_v2	GCAAGGTTCACTGTACTACTAAATACTTTGCAGTGGACTCTCCTATTGTGAACAAGGAAT	552	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.544	0.432	0.595	1.970	1.974	2.989
Raw	94.315	116.270	145.031	793.230	262.938	438.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5765.1	1018	2e-24	542 - 601	100	60 / 60	plus	ABC04544 ABC04545
MLOC	MLOC_5765.3	847	7e-23	1 - 57	100	57 / 57	minus	ABC04545
MLOC	MLOC_5765.2	726	7e-23	41 - 97	100	57 / 57	minus	ABC04545
JLOC1	JLOC1_3726.2	1272	8e-25	591 - 650	100	60 / 60	plus
JLOC1	JLOC1_3726.1	1453	8e-25	772 - 831	100	60 / 60	plus
Harvest21	ABC50226	582	3e-25	334 - 393	100	60 / 60	minus
Harvest21	ABC04545	999	3e-25	553 - 612	100	60 / 60	plus	ABC04545
Harvest35	U35_1711	1036	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (1036 bp)

>U35_1711 1036 Hv_44K_v2
CGGGCTGCAGGAATTCGGCAGAGGGGCAACCAGAGAGAAGTGCGAGCTCCTCCCTCTCCT
CCGACCCGCGCCGCCGCCTATAACGACCACTTCACGTGGCCTATCCTTCTCCCCCTTTTT
GTTCCTCGCCTAAACCACCACAAGCATGGAGGCCAAGAAGTCGCCGCCCACCCCTGCCTC
CACCGGATCGGCGGCGGCGGGGAACGGATACTTCAGCTCCGTCTTCTCCGCGTCGCCTGC
GGCAAATCCAAGAGACGCCAGGCAGATGGACCTGTACACGATGCTGAACAAGCAGAACCC
CAAAGGGCAGAGCGGTGGGGGCACTGCAGATGGCAAATCCCAAGGAAGCCCTGCTAAAGG
TCGTGTTGCTTACAAAGATGGAAAACAATTTTACCCAAACGAGTCCTCAGAGTCGCCTTA
TTTTGGTTCGTCTGTGCATTACGGCGGCCGGGACTTCTATGACAGCTCTCCACACAAGCA
GGCCAATGAATCATCGAGAAATTATAAGGAGGATAACACGGATGGCTCCCTGGCTACCAG
AGGTGATTGGTGGCAAGGTTCACTGTACTACTAAATACTTTGCAGTGGACTCTCCTATTG
TGAACAAGGAATAAAAAGGAGCAGGTCGAGCTGGTAGGCTGTAGAGTTGACATGAGTCAT
CAGGCATAAAAAGAAGAAGTCATAGTGGGGCTACATCTGTTCTGTCGGTGATGGCAGTAT
TTAGATGCATCAGTCACCTGGACAGATGTAGACATATATATGTATTTCCCTTTTGTTTGC
CCTATGTTACCTGATTTGAGTGCTGAAGTGTAATGGGACTGGCAGGGCAGCAGCAAAAGC
AGGTCCTACGAAACGTTGCTGCTCTTTTGCAACTGCAACGGACTGGATCGCTTGCTGCAT
GCTTTATGTATCCTTGCCCATGGTGTGTTTTAGGAATATTTGGATTTGCACATCTGTTTC
AGTCTAGCATTTGCTTCCTGAGTGAATCATGATATGAACTTGTGACAATGGTTGCTATTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38040.4	145	3e-58	protein\|expressed protein
Brachypodium v1_2	Bradi2g23540.1	147	6e-74
Arabidopsis v10	None