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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_10234_PI390587928Hv_44K_v2AAGTCGTACGCTTCAATTGTCAAAGTCATGAAAGCAGTTCTGCCACCAAATTCCGCCGTT893GeneList: ivory
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0070.9491.5901.3380.6380.394
Raw 653.610832.2151410.8901773.020318.337216.030



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64063.114772e-24521 - 58010060 / 60plus ABC04498
MLOCMLOC_64063.312142e-24444 - 50310060 / 60minus ABC04498
MLOCMLOC_64063.216572e-24856 - 91510060 / 60minus ABC04498
JLOC1JLOC1_42022.116068e-25743 - 80210060 / 60plus
Harvest21ABC0449818153e-25894 - 95310060 / 60plusABC04498
Harvest35U35_171217663e-25894 - 95310060 / 60plus



Contig Sequence (1766 bp)

>U35_1712 1766 Hv_44K_v2
AATTTTGCGGGAAACGCGACGCCACCCGGAGAAACCCTCCTCCCGCACGCCGCCTCCCCC
TTGCCAAAACCCTCGCCCCTCCTCCTCCTCCTCCTCATACGATGGCCGCGCCGACGCCTC
CGCCCGCCGCCCCCGCCCCCGCCCCCGCCGCCGCCGCGCCAGGACCGACGCCGCCGGCGC
AAGTGGTGGGCAACGCCTTCGTGCAGCAGTACTACAACATCCTCCACCAGTCCCCGGAGC
TCGTCTTCCGCTTCTACCAGGAGGCCAGCCGCATCGGCCGCCCCGCCACCACCGGTGCCG
ACATGGATACCGTCACCACCATGGAGGCGATTAACGAGAAGATCATGTCCATGGACATCG
CGCGGGCGGAGATCAGGGGTGTGGACGCGCAGGAGTCGCTATGTGGCGGTGTGACCGTGC
TCGTCACGGGCCACCTCACTGGGAAGGACGACGTCTGCCGCGAGTTCGCGCAGTCCTTCT
TCCTTGCGCCGCAGGAGAAGGGTTACTTCGTGCTCAACGACATATTACGTTATGTCGGCC
AGGGTGAGGCCGACCCGTCATTGCCGCCCCCTCAGCAGCAGCTGCCGGCACCGGAGTTGG
ATGCAGTGGTTGCCCCTGCTGCCGCCCTGGCAAATGGTACTGTTGCCCCTGCGGAGACTG
TGCCTCGCGAGCAGGAGGCTTCGCCGCAGCCAGAGCCGATTCTCTCTGAGTCTGTGCCTC
GTCCTAACGAGGAGGATGATCCCAAGGAGGAGGTTTACAACCCACCGAATGAGGCGGAGG
TGCCTGTTGTGGAGGAAACACCGGTTCCTGAGGTCATAGATGAAGTGCCAAATAATGTAG
CAACCTCCATACCGGTTTCGTCTCCCCCTGTACCGCATGAGGAGGCCCCTAAGAAGTCGT
ACGCTTCAATTGTCAAAGTCATGAAAGCAGTTCTGCCACCAAATTCCGCCGTTCCTTACA
GGCCTGCACCACCAAAACCGGAGAAGCAAGCTCCTGCTCCTGCTCCTGTTGTGGCTGTTG
ATGCTCCAACTTTCAGTCCTAATCCTGAGAGCAGCAACATTCAAGACCCAGAAGTTGATG
CGCTTGCGGTGTATGTAAAAAATCTGCCCCTACATGCCACACCAAGCCAATTAGAAGAGG
AGTTCAAAAGATTTGGTACTATTAAACATGATGGTATCCAAGTTAGAAGCCACAAGATTC
AAGGGTTCTGTTACGGCTTCATAGAGTTTGAGGATGCCAGCTCAGTTCAAAGTGCACTCG
CGGCTTCTCCTGTGACGATTGATGACCGACCATGCCATGTTGAAGAAAAAAGAACTCCTG
GTTCACGTGGTAGTAGCAGGGGAAGGTTTCCACCGGGTAGAGGTGGCAGCTTCCGAGGTG
AAGGCATGAGAGGCCGTGGTAGTTACACTGGAGGGAGAGGCTATGGAAGGGGCGAGTACA
ACTATCGATCTGAGTATGGAGGCAGAGGCGGTGGTAGAGGTGGGTCAGGTCGTGGAGGTG
ATGTTGGCTACCAGCGGGCAGCCGCAAAGTGAGTTCGGTAGCTATGCGTTGGTAGAAGTT
TGCTATTTCATTGTCGTTGAACGTACTAAGATTCACAAAAAAGGTGTGTCGTGAGCTGGG
TTCCTGTGAGGTCGTTGTCAGCGTATTCAGGTCATAAATTGATGTTCTCCTTGTTTTGTG
GCAAGGAAAGCAGTGGTGATATTGGTTACTAATTGTAGAATATTACAATCTATTCAGATG
CAGTCCTAGTAAAAAAAAAAAAAAAG



Homology of Contig U35_1712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g30430.14872e-129protein|nuclear transport factor 2, putative, expressed
Brachypodium v1_2Bradi5g07090.24663e-172
Arabidopsis v10None