barSeed - Barley Seed Development Database

Probe CUST_10233_PI390587928

Source Contig U35_1713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10233_PI390587928	Hv_44K_v2	TCCTTGTTTTGTGGCAAGGAAAGCAGTGGTGATATTGGTTACTAATTGTAGAATATTACA	656	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64063.1	1477	2e-24	1334 - 1393	100	60 / 60	plus	ABC04498
MLOC	MLOC_64063.2	1657	2e-24	43 - 102	100	60 / 60	minus	ABC04498
JLOC1	JLOC1_42022.1	1606	8e-25	1472 - 1531	100	60 / 60	plus
Harvest21	ABC04498	1815	3e-25	1707 - 1766	100	60 / 60	plus	ABC04498
Harvest35	U35_1713	762	3e-25	657 - 716	100	60 / 60	plus
Harvest35	U35_1712	1766	3e-25	1668 - 1727	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_1713 762 Hv_44K_v2
GCAGCAACATTCAAGACCCAGAAGTTGATGCGCTTGCGGTGTATGTAAAAAATCTGCCCC
TACATGCCACACCAAGCCAATTAGAAGAGGAGTTCAAAAGATTTGGTACTATTAAACATG
ATGGTATCCAAGTTAGAAGCCACAAGATTCAAGGGTTCTGTTACGGCTTCATAGAGTTTG
AGGATGCCAGCTCAGTTCAAAGTGCACTCGCGGCTTCTCCTGTGACGATTGATGACCGAC
CATGCCATGTTGAAGAAAAAAGAACTCCTGGTTCACGTGGTAGTAGCAGGGGAAGGTTTC
CACCGGGTAGAGGTGGCAGCTTCCGAGGTGAAGGCATGAGAGGCCGTGGTAGTTACACTG
GAGGGAGAGGCTATGGAAGGGGCGAGTACAACTATCGATCTGAGTATGGAGGCAGAGGCG
GTGGTAGAGGTGGGTCAGGTCGTGGAGGTGATGTTGGCTACCAGCGGGTCGATCACTCTG
CCACCGGTGGTCGTGGTGGTGCCCGGGCAGCCGCAAAGTGAGTTCGGTAGCTATGCGTTG
GTAGAAGTTTGCTATTTCATTGTCGTTGAACGTACTAAGATTCACAAAAAAGGTGTGTCG
TGAGCTGGGTTCCTGTGAGGTCGTTGTCAGCGTATTCAGGTCATAAATTGATGTTCTCCT
TGTTTTGTGGCAAGGAAAGCAGTGGTGATATTGGTTACTAATTGTAGAATATTACAATCT
ATTCAGATGCAGTCCTAGTAAGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g07090.2	466	5e-53
Arabidopsis v10	None