barSeed - Barley Seed Development Database

Probe CUST_10232_PI390587928

Source Contig U35_1714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10232_PI390587928	Hv_44K_v2	CGTGGCCGCGTGTTTCCATAATCCTAAATAATACTATGTGAAACTGGTGTCGATGTTAAA	1827	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372497	3251	2e-23	3173 - 3230	100	58 / 58	plus	ABC04563
MLOC	MLOC_10856.2	1277	2e-23	185 - 242	100	58 / 58	minus	ABC04563
JLOC1	JLOC1_7138.2	2305	1e-23	1871 - 1928	100	58 / 58	plus
Harvest21	ABC04563	1993	4e-24	1817 - 1874	100	58 / 58	plus	ABC04563
Harvest35	U35_1714	1917	3e-25	1828 - 1887	100	60 / 60	plus

Contig Sequence (1917 bp)

>U35_1714 1917 Hv_44K_v2
GTGTTTGGAATTCACAACTCAGCCATTCTCTTCGCCCCCATCTTCTTTCTTGCGCGGAAG
GGAAAGAGAGGAGAATTTGGAATTTCCATACCATTTTCTTCTTAAAAGTAAATCGAAGCG
AGGAGGAGTCCGCGAGATGGCGATGGCGAGCTTGGCGAGGAGGCGCGCGGTGGAGGCGGT
GCTGCTGCGGCGGCCCCACGCGGCGGCGTGGGCGTCCGCGTGCCGTGGGTACGCGACGTC
GGGGGAGGAGAGCGACGTCGTCGTGATCGGCGGCGGGCCCGGCGGGTACGTGGCGGCCAT
CAAGGCGGCGCAGCTCGGCCTTAAGACCACCTGCATCGAGAAGAGGGGCGCGCTCGGGGG
GACCTGCCTCAACGTCGGCTGCATCCCGTCCAAGGCTCTTCTGCATTCGTCGCATATGTA
CCATGAGGCGAAGTCTTCGTTTGCACACCATGGCGTCAAGTTCTCCAATCTGGAGGTAGA
TCTACCTGCAATGATGGCTCAGAAAGACAAGGCTGTTTCTGGGCTTACAAAGGGCATCGA
AGGCCTGTTCAAGAAGAACAAGGTTGAGTATGTTAAAGGGTTTGGGAAGCTTGTCTCTCC
GTCAGAGGTATCTGTGGATTTAGTTGATGGTGGTAGCACTATCGTCAAAGGGAAGAACAT
AATTGTTGCCACTGGCTCAGATGTGAAATCGCTCCCTGGAGTTACAATTGATGAGAAGAA
GATTGTGTCATCTACCGGGGCTCTTGCACTTACAGAAATACCAAAGAAGTTGGTGGTCAT
TGGAGCTGGATACATAGGTCTAGAAATGGGTTCTGTCTGGAACAGGCTAGGGTCTGAAGT
CACTGTGGTTGAATTTGCCCCTGATATTGTCCCATCAATGGATGGAGAGATAAGGAAGCA
GTTTCAGCGTATGCTGGAGAAGCAAAAGTTTAAGTTCATGCTCAAGACAAAGGTAGTTGG
GGTTGATACTTCTGGAAGTGGTGTCAAGCTAACTGTGGAGCCTGCAGCTGGTGGAGAGCA
GAGTGTCATTGAGGCTGATGTTGTCCTTGTATCTGCTGGCAGAGTCCCATACACTGCTGG
TATTGGGTTGCATGCCATTGGCGTTGAGACAGACAAGGGCGGAAGGGTCCTTGTTGACAA
GCGCTTTATGACAAATGTCAAGGGCGTATACGCGATTGGAGATGCGATCCCTGGACCGAT
GCTTGCACATAAGGCTGAGGAGGATGGTGTTGCATGTGTTGAATTTATTGCAGGGAAGGA
GGGCCATGTTGACTATGACACTGTACCTGGGGTGGTGTACACACACCCAGAGGTGGCCTC
CGTTGGCAAGACAGAGGAACAGGTCAAGGCATCTGGTGTAGCCTACCAGGTTGGCAAGTT
CCCCCTGCTGGCAAACAGTCGGGCGAAGGCAATCGATGATGCCGAAGGGATGGTGAAGGT
GATATCTGAGAAGGAAACTGACAGAATCCTCGGTGTACACATAATGTCCCCTGGTGCGGG
CGAGATCATCCACGAGGCTGTGCTTGCCCTTCAGTATGGAGCATCCAGCGAGGACATTGC
CCGCACGTGCCACGCACATCCGACAGTGAGCGAGGCCCTGAAGGAGGCGTGCATGAACAC
CTACGACAAGGCGATCCACATGTGATTTCTGATGTGAGTTCAGCTGCCAGCTCGAAACAA
TTGGCGAGTTTTTGAAATAATTTTGAATCGATGCGTTCTAGAAACATCTATTTTTCTTTT
GTTGCGGGCTAGTTTCCTATGTGAAACTGTGAATTGCGACCTTCGCTGGAGATTATAGCC
ACATGATGTTAAATTCTCTTTCCTTGCCGTGGCCGCGTGTTTCCATAATCCTAAATAATA
CTATGTGAAACTGGTGTCGATGTTAAAAAAAAAAAAAAAAAGCTTCTGTTTCAGTTG

Homology of Contig U35_1714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g06750.1	505	protein\|dihydrolipoyl dehydrogenase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g34770.1	503
Arabidopsis v10	AT1G48030.1	507	\| Symbols: mtLPD1 \| mitochondrial lipoamide dehydrogenase 1 \| chr1:17717432-17719141 REVERSE LENGTH=507