barSeed - Barley Seed Development Database

Probe CUST_10226_PI390587928

Source Contig U35_1720

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10226_PI390587928	Hv_44K_v2	ATGTGTTCGCTCTGGATTTGGAGGTGGCGCGATTCGTGGGACTCGATGCTGTTATGCCGT	1253	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.882	1.885	1.064	0.658	0.207	0.178
Raw	20307.433	19913.180	10270.333	9825.200	1136.170	1053.919

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3640.1	1627	8e-25	1368 - 1427	100	60 / 60	plus
Harvest21	ABC05649	1383	3e-25	1227 - 1286	100	60 / 60	plus
Harvest21	ABC05648	1348	3e-25	1218 - 1277	100	60 / 60	plus	ABC05648
Harvest35	U35_1720	1423	3e-25	1254 - 1313	100	60 / 60	plus

Contig Sequence (1423 bp)

>U35_1720 1423 Hv_44K_v2
TCGAGCACTGTTGGCCTTGGGGTTCTCAGTGCCTTCACCTTCTCAGCCGTCCTCTCTCTT
CTTCCTCCGTGCTACTGCTAACTTACGTACGACTGTCGTGTTGGCCTCCAATGGCGAGGG
CTCCGGTGCTTCCCGCGATCTTGTGCCTCGCGGCCCTTGCGCTGGCCGGCGGCGCCGACG
CGAGGAAGATGGTCGGCGTGTACGAGCTCAAGAGAGGCGATTTCTCCGTCAAGATGACCA
ACTGGGGCGCCACCATCATGTCCATCCTCGTCCCTGATTCCAAAGGGAATTTGGCCGATG
TTGTGCTGGGCATGGACACCCTCGCTGAATATGTTAATGACACCTCTTACTTTGGGCCGC
TGAATGGGAGGGTGGCGCAGAGGATGGCCAGGGGCCGCTTCGTCCTCGACGGCAAAGTAT
ACCATACCTACCTCAACGACGGCAAGAACGCAATTCATGGTGGCAAAAGGGGGTTCAGCA
AGGTGATATGGACGGTGAAGGAGTACGCCGCCGGCGGCGACTCCCCGTACATCACCATGT
ACTACCGCAGCTTCGACGGAGAGCAAGGGTTCCCCGGAGACCTTGACGTGTACGCGACGT
ACCAGCTGACGGGCCCGTACGAGCTGAGCATCCGCACGAACGCGACGGCATTGAACAAGG
CGACGCCGGTGAACTTCCTGCAGCACGTGTACCTGAACCTGGGCGGGCAGGGCAGCGGCG
ACATCCTGGGCCACACGCTCCAGCTCTCGGCCTCCCGGTACACCCCGATGGACGAGGAGC
TCCTCCCGTCGTCCGGCCGCGTCGACCCCGTGGCCGGCACCAGCTACGACTTCCGCACGC
CGACGCCCATCGGCGCGCGCATCCGGCAGGTCATGGGCGGCAAAGTCTACGGGTACGACA
TCAACTACGTGATCGACGGGGAAGGCATGCGGAAGGTGGCGGTGGCGCGGGACGGCAAGT
CCGGGCGTGCGCTGGAGCTGTGGGCCAACCAGCCGGCCATGCAGCTCTACACCGGCAACT
TTCTCAACCACACCAAGGGCAAGGGCGGCAAGGTGTACGAGCAGTACGGCGGGTTTTGCC
TTGAGACGCAGGCGTACCCGGACGCCGTGAACCACCCCGAGTTCCCGTCGGTCACGGTGA
GGCCCGGCCAGGTGTACAAGCACGACATGCTCCTCAAGTTCTCCTTCTAGCTAAGGCTGA
ACTATGGCTGCGGCACGGTAGCAATAGTACCACCATTGGTTGATGGGTCGTAGATGTGTT
CGCTCTGGATTTGGAGGTGGCGCGATTCGTGGGACTCGATGCTGTTATGCCGTGGGCCCA
GAACGGATACGGTATTTGAAAAATAAATTCATATGTTTGTGCAGTGCAAAAAAAAAAAAA
AAAATAGTGCATATTCAACGCTGACTCTCAAAAAAAAAAAAAA

Homology of Contig U35_1720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38540.1	364	0.0	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g12280.1	363	0.0
Arabidopsis v10	AT5G15140.1	490	4e-113	Galactose mutarotase-like superfamily protein \| chr5:4908686-4910670 FORWARD LENGTH=490