barSeed - Barley Seed Development Database

Probe CUST_10224_PI390587928

Source Contig U35_33016

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10224_PI390587928	Hv_44K_v2	TGAAATCCAAAAACTCAAGAGTGGGCACCTTCAGGCTAGTCAAAAGCAGAAGGATATCAA	192	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.918	1.180	1.459	1.426	0.613	0.587
Raw	46.331	87.370	100.089	152.145	23.101	24.373

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371457	2092	2e-24	833 - 892	100	60 / 60	plus	ABC05417 ABC26919
MLOC	MLOC_80130.3	907	2e-24	472 - 531	100	60 / 60	plus	ABC05417
MLOC	MLOC_80130.4	948	2e-24	472 - 531	100	60 / 60	plus	ABC05417
MLOC	MLOC_80130.1	1024	2e-24	481 - 540	100	60 / 60	plus	ABC05417
MLOC	MLOC_80130.5	846	2e-24	463 - 522	100	60 / 60	plus	ABC05417
MLOC	MLOC_80130.2	1095	2e-24	481 - 540	100	60 / 60	plus	ABC05417
JLOC1	JLOC1_53363.3	1027	8e-25	464 - 523	100	60 / 60	plus
JLOC1	JLOC1_53363.2	907	8e-25	484 - 543	100	60 / 60	plus
JLOC1	JLOC1_53363.1	931	8e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_33016	422	3e-25	193 - 252	100	60 / 60	minus

Contig Sequence (422 bp)

>U35_33016 422 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCTTCCAGATGATGCTCGAGCGGCCGCTCGACCCCGTACA
GATAACGAAGAAGGACACTGACGCTTCTGACTGGTCTCTGGTTGATCCTCTTCTACTATT
TGCCTCCGAGGATTACCTTTAGACTTGCCCCGTACAGATGGACCTTCAGACCTAGATTTT
CTACGTGTCCCGTTGATATCCTTCTGCTTTTGACTAGCCTGAAGGTGCCCACTCTTGAGT
TTTTGGATTTCATCATCTTTCTCACTGACCAGGGAGTGCATTTTATGTAGCTTATCCTCG
AGAGCCAGCATCTTCATTTTGGCATCATTAGCTTCAGCCTGCAATCTGCCAATATCGTCA
TCCTTCTTTTGGGCCACCACTTGCAGTTGCAGCTCCTCCAGCTTCTGCTGAAGCTTTTCT
GC

Homology of Contig U35_33016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None