barSeed - Barley Seed Development Database

Probe CUST_10219_PI390587928

Source Contig U35_48985

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10219_PI390587928	Hv_44K_v2	TCAGACATAGGATTTGTAAAGAATTGCCTGCCATTTCCTTTTTTGTGTTATGCGTTTCCT	7	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.682	2.569	1.339	0.655	0.295	0.263
Raw	44.162	106.946	47.141	39.815	4.211	4.113

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6363.5	2921	2e-24	1341 - 1400	100	60 / 60	minus	None
MLOC	MLOC_6363.7	1472	3e-21	1 - 54	100	54 / 54	minus	None
JLOC1	JLOC1_4140.4	3852	8e-25	1808 - 1867	100	60 / 60	plus
Harvest21	ABC50870	601	3e-25	8 - 67	100	60 / 60	minus
Harvest35	U35_48985	601	3e-25	8 - 67	100	60 / 60	minus

Contig Sequence (601 bp)

>U35_48985 601 Hv_44K_v2
TTTATTTAGGAAACGCATAACACAAAAAAGGAAATGGCAGGCAATTCTTTACAAATCCTA
TGTCTGAGTTGTAGTTTACTTGATAAGCTACTGAAGTAAAGTGCTATATGGGGTGGAATG
ACGGATGGCGGTATAAAGGATTTTGCTGGAAAGGGTTATATTGAGTAGGTACAGCATTTG
CTGCAACTGGTCCACCTTGAATTCCTGGTAAAAATGGTAGAGGAATTGCAGGCATTAGAT
CAAATGGCCGATGTCCAATGGGACCAATCTGTGCCACATTCGGAATCACAGGTGATAGAG
ATCTTGCCAGAGGACCAGTTGGTGTTGGTAGCTTGGTAACACATGGCCGTGGCTGGTTCA
AGTACAGCTGTTTCCCTTCCAGCTTTCTTTGTTTCCCCTGCACTTGGCCATCTTGTTCCT
CGTGTTGCTGCTGCTCCTTCTTGTGCTTCTTGTGTTTCTGATTTTGCTTCTGCTGTTGGA
TTTTTTGCTCCTGCCTTGAATTTAATGTCGACGTAGTAGAGGCATTTGTTGTAATACGGC
TCTTTGCATATTCAGCTAACAAATTGTTAATCTCTTCCAAGATAGTAACCGATTTGCTTG
A

Homology of Contig U35_48985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None