barSeed - Barley Seed Development Database

Probe CUST_10211_PI390587928

Source Contig U35_21044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10211_PI390587928	Hv_44K_v2	TCACAGCATATAATGCTTTAAGAGCGACTATGGCTGCATGCATCGATTGATGCAGAAGCC	726	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.536	0.518	0.899	1.729	1.597	2.392
Raw	4.629	6.332	13.115	34.758	12.486	20.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12584	401	3e-25	266 - 325	100	60 / 60	plus	ABC12584
Harvest35	U35_21044	862	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_21044 862 Hv_44K_v2
GCACACATAANGTCCGATCGACGAGATTCCTTCTTCTAGCTAGTCGATAGTCGACACACA
ACCGCAAGCCTCTCGCCATGGCCAACCCCAACAACGCTTCGTGGTCCAGCGGTCTCTGCG
CCTGCACCCACGACGTCCGCAGCTGCTGCCTGACGCTCTTCTGCCCGTGCGTCGTATTCG
GCAGGATCGCCGAGATCGTCGACAAGGGAGCCACATCTTGCTGCAAGAGCGGGACGGCGT
ACACGCTGCTGGCGTCGGCGACGGGGCTGGGCGCCTGCCTCTACTCGTGCGGCTACAGGT
CCAGGCTGCGGGAGCAGTACGGGCTGGAGGAGAAGCCCTGCGGCGACTGCTGGGTGCACT
GGTTCTGCGAGCCCTGCGCCCTCTGCCAGGAGTACCGAGAGCTCCAGAGCCGCGGCTTCG
ACATGGCCCTCGGATGGGAGGGGAACATGGAGAGGATGGGCAAGAGCGGTGCAACCGCCG
CACCGCGGACGCAACCGGGGATGACTCGCTAGTGTGTCCGCATGCATGCGCCGCTTAATC
AAACGCATGCATTGCGTGCTCAATGTCAGCTTCCAAGTCAACATAAAGAATATCAGTCTA
GCTACACCAGCTTCGATCGATGTGTGTGTCTTTCTATTGCCAAGATCCGTCTTCCTTTCC
TGCACCCACACCATGTATCTGTGATATTTTTGAAGACATTCGAATAAGACCATAATGCTT
ACTCGGTCACAGCATATAATGCTTTAAGAGCGACTATGGCTGCATGCATCGATTGATGCA
GAAGCCGGGGGTTTAACCTCCTTCTCTAAAAAAAAGACAAAAGGCTTAACTCCTCANATT
AAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36940.1	163	1e-55	protein\|uncharacterized Cys-rich domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g12460.1	154	8e-75
Arabidopsis v10	AT1G68610.1	160	1e-51	\| Symbols: PCR11 \| PLANT CADMIUM RESISTANCE 11 \| chr1:25763623-25764105 FORWARD LENGTH=160