barSeed - Barley Seed Development Database

Probe CUST_101_PI415269222

Source Contig TA45060_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_101_PI415269222	Hv_44K_v2	TTTAAGGAACGAACTGTAATATTGACTTCATGTAATGCACCAGAGCGACGCAGCTGCACG	1199	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.982	1.413	2.322	1.357	0.552	0.457
Raw	120.582	270.629	398.734	343.346	50.657	45.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361355	1505	2e-24	1408 - 1467	100	60 / 60	plus	ABC13621
MLOC	MLOC_55849.1	4440	2e-24	4345 - 4404	100	60 / 60	plus	ABC13621 ABC22285
JLOC1	JLOC1_36065.1	1686	8e-25	1507 - 1566	100	60 / 60	plus
Harvest21	ABC13622	603	3e-25	485 - 544	100	60 / 60	plus
Harvest21	ABC13621	1265	3e-25	1195 - 1254	100	60 / 60	plus	ABC13621
Harvest35	U35_20291	1309	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1302 bp)

>TA45060_4513 1302 Hv_44K_v2
CGGCACGAGGCTTTTGTTGCCCCCGAGCGACCGAGCGAGCTCTCGGTGCCCGTGCCGACT
TCCTCCACCGCCCGCTTCCGCCTTTTCGCCACGCCCCCCTCTTTCTGTCCCCGCCTCTTC
TTGGCTAGCCGTTGAGGAGTTGAGGAAGGAGCGGCCATTGCGGTGGTGTGTGTGAGCTGC
GAGGTGAGGTGAGGATGTCGTCCGCGGTGGAAGCCATCTCCTGCTCCAAGGTCGCCGCGG
CCGCGGCCGGGCCTGAGGAGGCCAAGGAGTGCGCGGCGGTGGCGGAGCACGGCAGCGGCA
ACGGCAACGGCGGGGGTGACGCCGCGCCGCATTGCGGCAAGGGCGTGGAGGAGGAGGACG
AGGAGGACGGCGAGAAGGTCCCCGAGCACATCGACCTCGGCCCCATCCTCAGCATCAAGG
ACCAGCTGGAGAAGGACAAGGACGACGAGAGCCTGCGGAGGTGGAAGGAGCAGCTCCTCG
GCAGCGTGGACTTGAACTCCGTCGGAGAGACGCTGGAGCCGGACGTGAAGATCATGAGCC
TGTCCATCCAGTCCCCGGGGCGGCCGGACATCTTCCTGCCGCTGCCGGCGGAGCTGAGCG
GCAAGGGGGTGTGGTTCACCCTCAAGGAAGGCTCCCCGTACAAGCTCAAGTTCACCTTCT
CCGTCAGCAACAACATCGTCTCCGGCCTCCGCTACACCAACACCGTCTGGAAGACCGGCA
TCAAAGTGGACAGCGCCAAGGAGATGCTGGGCACATTCAGCCCGCAGCCGGAGCCGTACG
CGTACGTGACGCCGGAGGAGACCACGCCGTCCGGGATGTTTGCCCGGGGATCCTACTCTG
CCAAGACCAAGTTCCTGGACGACGACCGGAAGTGCTACCTGCAGATCAACTACACCTTCG
ACATACGCAGGGAGTGGCCGTCGTCAGGCTGAGCCCGATTTGTCCGGTGGCTGCCGAAGT
GCCTGCCTGCCTGCCTGGGTTACTGCTGTTACCGTTGCCGTTGAAGCAGATCGGTCTTTG
TTTCGTTTGCAGTTTTACTATTCCTGCCTGTTTTTCGTGGTTGCCGTTGCCTTAAGGCTC
TTGTCTCCTGTGGTGCGTGCGTGCGTGCGTGCGTGTAAATTGGTTCGGTTGTTTATGTGT
AAAATGTCAGTGCGTCCGTCTGTGTGTGAGAGAGCGCTTTGCCAATTGTCAGGGTCTGTT
TTAAGGAACGAACTGTAATATTGACTTCATGTAATGCACCAGAGCGACGCAGCTGCACGC
ACTTCGTGTAATGCTCGAGAAAGAAAGAATATTTGCCACTCA

Homology of Contig TA45060_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48730.1	378	3e-115	protein\|rho GDP-dissociation inhibitor 1, putative, expressed
Brachypodium v1_2	Bradi3g53540.1	254	2e-116
Arabidopsis v10	AT3G07880.1	240	7e-94	\| Symbols: SCN1 \| Immunoglobulin E-set superfamily protein \| chr3:2514175-2515544 FORWARD LENGTH=240