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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_10194_PI390587928Hv_44K_v2CACTAGAGAAGGAATATCCTAGGCAATAACGAGGAGATATAAACGGGGCAGGATCGAATC17GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.3262.5891.2270.7700.4670.762
Raw 114.507196.89782.31080.39016.78130.302



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_22098.317993e-211720 - 17799758 / 60plus ABC43343
MLOCMLOC_22098.113273e-211243 - 13029758 / 60plus ABC43343
MLOCMLOC_22098.417153e-211632 - 16919758 / 60plus ABC43343
JLOC1JLOC1_15319.213782e-211242 - 13019758 / 60plus
JLOC1JLOC1_15319.113592e-211223 - 12829758 / 60plus
Harvest21ABC433436603e-2518 - 7710060 / 60minusABC43343
Harvest35U35_450046603e-2518 - 7710060 / 60minus



Contig Sequence (660 bp)

>U35_45004 660 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATTCGATCCTGCCCCGTTTATATCTCCTCGTTATTGCCTAGG
ATATTCCTTCTCTAGTGATGGCACACATGTTTGATACAAAAATCGAGTTTGCATCCCCCT
CTCGCAAGTATACCAGCCTCGAGCGTTGCCACGCAATCGTTTGCTCTACAGAGCATAGGC
CCAATAGCTCCCTCATTTATTTTTTTCTGCGGGTACAATAGCTACCATTAAAACAGCTTA
CACACCTCAAATTCCTCATGAGACCTCAAATTCCTCATGAGACATCGAGAGCAATGGAAA
TTTGTAGCTTGATGTTGCCAATCCACTTGTCACTCCACTGTTGCAGGCTCTTCGCGGTGG
CCCTCCCTCATTTTGTTATTCAGCGTAACTAAGGGATTTCCGGTTGACGAGATGTGCTGG
ATGTTGTCAAATTGTGGGACTCTGTTCCGATCGATAGGAGATTGCTGATATCCTCCAGGA
AACCAAAGAGCACTCCTGAAATTTGCTACTTCTCATATCTCCATTGTTGAGCAGGAAGCT
GACGAGTTAGCCCACCGCTGAGTGTAAGGATCATAAGATAACCGGAATTGAACACATTCT
GCCGGTTGGGCTGACCTTGATTGAATGAATTACATCTTTTTCAACAACTTTTTACTACAG



Homology of Contig U35_45004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None