- Probe CUST_10187_PI390587928
- Source Contig U35_21053
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10187_PI390587928 | Hv_44K_v2 | ATTGTAGCTTGGTGTTAGCGAGGTTGATCTATGTGAACATTGGTTGTGTATTGTAAAAAA | 443 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.761 | 1.277 | 1.485 | 1.397 | 0.813 | 0.774 |
| Raw | 1021.949 | 2734.569 | 2718.050 | 3928.127 | 834.386 | 852.917 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52112.1 | 1395 | 9e-22 | 1336 - 1390 | 100 | 55 / 55 | plus | ABC13720 ABC43780 |
| JLOC1 | JLOC1_33348.1 | 1483 | 5e-22 | 1104 - 1158 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC13720 | 514 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus | ABC13720 |
| Harvest21 | ABC43780 | 395 | 2e-22 | 26 - 80 | 100 | 55 / 55 | minus | ABC43780 |
| Harvest35 | U35_21053 | 514 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus |
Contig Sequence (514 bp)
>U35_21053 514 Hv_44K_v2 GGAACCGCGTGTCGGCGCAGCAGGCCCGGGAGCGGAAGAAGGCCTACATGACGGAGCTGG AGGTCAAGGCCAAGGACCTCGAGCTCCGCAATGCCGAGCTCGAGCAGAAGGTCTCCACCC TCCAGAACGAGAACAACACGCTCCGCCAGATACTCAAGAACACGACGGCGCACGCCGGGA AGAAGCCGAGCGGCGGCGGCGGCAAGGGGGGAGACGGCGTCAAGAAGCACCACCACCACT TCGGCAAGAGCTAGTAGTAGTAAGAGCTGCGACCATGGTTGCTGCTTGCTAGGAACCGAA CGCCTGCTCATCTGACCATTGTTAGGAACACTGCTGTTGTTGTTTGCCGCCGCAGTTTGA CGCTCGTATTGTCTTTTGCACCTTTTTTTTTCACGGTTTGCTGAGAAGGATGTCTCACTG TCACTGTTGTGTGTACCATGTCCATTGTAGCTTGGTGTTAGCGAGGTTGATCTATGTGAA CATTGGTTGTGTATTGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_21053 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |