barSeed - Barley Seed Development Database

Probe CUST_10182_PI390587928

Source Contig U35_21059

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10182_PI390587928	Hv_44K_v2	TTAATTCAGCGGAAAAGGCCCCTTCCAACCACCGGCGCTGGACGAACGTGGGCGATGCTC	35	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248493.1	1230	2e-24	52 - 111	100	60 / 60	plus	None
MLOC	MLOC_59296.1	911	2e-24	397 - 456	100	60 / 60	plus	None
JLOC1	JLOC1_38578.1	733	8e-25	240 - 299	100	60 / 60	plus
Harvest21	ABC26487	608	3e-25	20 - 79	100	60 / 60	plus
Harvest35	U35_21059	624	3e-25	36 - 95	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_21059 624 Hv_44K_v2
CTCCCCTTTCGCTTCTCTCGCGTCTCGCCACAACTTTAATTCAGCGGAAAAGGCCCCTTC
CAACCACCGGCGCTGGACGAACGTGGGCGATGCTCCGGCCATCGCCGTATTCCTCGAGGC
GTCTCCTCCAGAGCGGCGACCCCGGCCGCATCCCGGGAATCCCCCCGGCCGATCCGCCCG
CCGGCGTCAGCTCAGATGTCGTCGTCATCCTCGCCGCCCTGCTCTGCGCGCTCATCTGCG
TAGTCGGCCTCGCCGCCGTCGCGCGGTGCGCGCGCTCCCGCCGCAACGCCAACGCCAACG
CCCACCCCTCCTCGCCGTCCGGTAGCCCGGCCCACGCCCTGGCGGCCTTCGGCGGGGCCG
GCGGCGGGCATAACCACGGCGCTACGACTACTACGACGACAGGAGCGTCCGGGGGCAGCG
TGACGACCACCAGCAAGGGGCTCAAGAAGAAGGCGCTCAAGGCGCTGCCGAAGCTGGCGT
ACGCGGACGCGGTGGCCGCGGCGGCGGCGGCGAGGGGCGCCGTGGCGGGGGGCGAGGAGG
AGGAGGGACAGGACGGGATCCTCGCGGAGTGCGCCATCTGCCTGACGGAGTTCGGCGAGC
GGGAGGAGGTGCGCGTGATGCCGC

Homology of Contig U35_21059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None