barSeed - Barley Seed Development Database

Probe CUST_10178_PI390587928

Source Contig U35_45011

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10178_PI390587928	Hv_44K_v2	AGGGAGGATTGCATCAAGAGCAAGCTGCTAGTTCCGTCCGTGCTTGGAGTTGGAGGCAAG	188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60199.1	2160	2e-24	1477 - 1536	100	60 / 60	minus	None
JLOC1	JLOC1_39233.1	1819	8e-25	306 - 365	100	60 / 60	plus
Harvest21	ABC43366	441	3e-25	189 - 248	100	60 / 60	plus
Harvest35	U35_45011	441	3e-25	189 - 248	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_45011 441 Hv_44K_v2
CACACACCTGTCTGCTTCGCCCCGCCTCCTTCGCTCTCCTCCTCCTTCTTGCCGTTTCTT
TCCTCGAGACTCTCTCCTTCCTTCTCTCCGGCGGCCGCCGCTCTGGTGCTGTTCTTGGCG
TGGAGGAGCGGGAGATGGGAGGGTCCGGGAAGTGGGTCAAGTCGCTCATAGGGCTCAAGA
AGCCCGACAGGGAGGATTGCATCAAGAGCAAGCTGCTAGTTCCGTCCGTGCTTGGAGTTG
GAGGCAAGGGCCGGAAGTGGAGGCTGTGGAGGACCTCCTCCGGCGACCACGGCTCCCTGT
GGCGCGGCTCCAGAGGCGGCAGCCAACGGTCCGCGGCGTCCGAGGCCTCCGACGACGCCT
CCTCGCTGGCCGCCGCCGCCGCCGACATGTTCACCGCCGCCCTCGCCACCGTCGCCCGCG
CGCCCGCCAAGGACTTCATGG

Homology of Contig U35_45011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None