barSeed - Barley Seed Development Database

Probe CUST_10173_PI390587928

Source Contig U35_45018

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10173_PI390587928	Hv_44K_v2	TCTAAAGGAGCAGCTGAATTCCATCACACCAGCCCTGCAAGAGATGCAAATGAAGAAAGA	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253123.1	1978	2e-24	328 - 387	100	60 / 60	plus	ABC48259
MLOC	MLOC_67736.3	935	2e-24	413 - 472	100	60 / 60	plus	None
MLOC	MLOC_67736.1	2851	2e-24	536 - 595	100	60 / 60	plus	ABC48259
MLOC	MLOC_67736.2	2971	2e-24	536 - 595	100	60 / 60	plus	ABC48259
JLOC1	JLOC1_44749.2	2587	8e-25	525 - 584	100	60 / 60	plus
JLOC1	JLOC1_44749.1	2561	8e-25	542 - 601	100	60 / 60	plus
Harvest21	ABC43382	463	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_45018	463	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_45018 463 Hv_44K_v2
TAATGCAGGNCTCTAAGCAAGTAGGAGTAGCACGCCCATTTGGGTTGCTCCCGCGTTTTT
TTTATTTTACCTCGAGATTGTCGGAAGTTCTTGCAATGGGGTCACTCAGGACGGCTGGAA
CAGCTCAGCGCCTGGCTCTGCCCGAGTCCTCATCTACCTACTTGCTTCAAGAACTAAAGA
TGATATGGGACGAGGTTGGACAAGAAGAAAACGAGAGGGAAAGAATACTGGAAGAGTTGG
AGCAGGAGTGCCAGGAAGTTTACAGGAGAAAAGTAAATAGTGCTAACATGTTGCGGATTC
AACTGCATCAAGCATTGGCTGAATCTGAAGCAGAATTTACCAACCTACTTCTTTCCCTCG
GAGAAAGATCATTCCCAGGCCGGCCTGAGAAAATGAACGGCACTCTAAAGGAGCAGCTGA
ATTCCATCACACCAGCCCTGCAAGAGATGCAAATGAAGAAAGA

Homology of Contig U35_45018 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None