barSeed - Barley Seed Development Database

Probe CUST_10172_PI390587928

Source Contig U35_21060

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10172_PI390587928	Hv_44K_v2	GGCACTACAATGTAACAGCATGGTTTTCATTACAATATAGCGAACATGTTTACATACTAC	948	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.821	1.876	1.136	0.705	0.267	0.283
Raw	304.206	489.116	260.115	266.019	33.851	39.354

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368461	1030	2e-24	942 - 1001	100	60 / 60	plus	ABC15220 ABC31625
MLOC	AK355764	1039	2e-24	862 - 921	100	60 / 60	plus	ABC15220 ABC31625
MLOC	MLOC_13651.1	725	2e-24	47 - 106	100	60 / 60	minus	ABC15220 ABC31625
MLOC	MLOC_13651.2	629	2e-24	44 - 103	100	60 / 60	minus	ABC15220 ABC31625
MLOC	MLOC_13651.4	1909	2e-24	30 - 89	100	60 / 60	minus	ABC15220 ABC31625
MLOC	MLOC_13651.3	1959	2e-24	44 - 103	100	60 / 60	minus	ABC15220 ABC31625
JLOC1	JLOC1_9256.1	923	8e-25	680 - 739	100	60 / 60	plus
Harvest21	ABC15220	1025	3e-25	949 - 1008	100	60 / 60	plus	ABC15220
Harvest35	U35_21060	1025	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_21060 1025 Hv_44K_v2
CGGCCTTCCACGAAAAAGGAGTACTCCGGCTGCAGACGCAAACCCAAACCAAGCGAAAAA
TATCCACTGAATCTCTCTCGCTGCTCGCGGCCGCGGCGACCGGAGTAAAGAAGGAATCGA
AGGCGACGATGGCGTGCCGAGCCCTCGCGCTCCGCTCCTTGCTGCTCCCCGAACCCCTCC
ACCACCTGAGCCTCCGCGCCGCCGCGTCGGCCCCGGCGGCGCAGTTTCCTTGTTGCGGCC
GCCGCCGTCGCCGCAACCTTCGCTGCTGCTCCAGCTCCAGCTCTAGTGGGAGCGGGTCCG
GGGAGCAGGGACAGCCACCGCAGGAGGCCGTGCTCGAGGCCATCTCAAAGGTGGCAAAGT
CTAAAGGAAGGGTTGCACTCACAACAAATATGGTCATAGGTGGTACTGTCACAGATGATT
CAAGTGATGAATGGCTTGTTTTGGATCAGAAGGTGAACACATACCCCACAGACAGAGGAT
TTACAGCAATTGGTACTGGAGGTGAAGATTTTGTCCATTCTATGGTTGATGCCGTTGAAT
CGGTTCTTCAAGAATCGATTCCAAAGGGTCAAGTAAGTCAGAAAATATCTTCTACAGGAA
AATATGTTTCTGTAAAAATCGGGCCAATACGTGTGGTTTCAAGTGAGCAGGTCCAGGCTG
TATACCGCGCCATGAGAAGAGATAACAGGATGAAGTACTTCTTATGAACTGCAATTACTC
TTTCCTGTTTAGTTCCTTCGATCATCTTGTAACACCGGCGTCCTGTTATACGTTTTGCTG
TACTTGTAAGTACTGCCTCAAATGAAAATATTGTGTTGGTTTTCCAGTTCATTGGCTCCA
TGTGACACAAAGATACCCCCTGCAGGCTGGAGCTTCTGTGAACTGATGAGAGGAAGAACA
TTTTTGTGTTGCTTTAGCCCAAATAGAAATTGCTCCATTATTCAGACAGGCACTACAATG
TAACAGCATGGTTTTCATTACAATATAGCGAACATGTTTACATACTACATATGTTTAAAG
ATAAA

Homology of Contig U35_21060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31690.1	184	8e-76	protein\|expressed protein
Brachypodium v1_2	Bradi5g07870.2	191	8e-82
Arabidopsis v10	AT1G27385.4	254	2e-58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 79 Blast hits to 79 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr1:9510475-9512820 REVERSE LENGTH=254