barSeed - Barley Seed Development Database

Probe CUST_10170_PI390587928

Source Contig U35_21062

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10170_PI390587928	Hv_44K_v2	GCGTCCAGATTGATGAATGATGAGCTGATGTCAAGGAAATTAGCTGCACATTTGTGCAAA	717	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.149	1.348	1.234	1.013	0.440	0.415
Raw	555.225	1023.833	822.774	1038.642	163.604	167.046

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375101	1930	2e-24	1867 - 1926	100	60 / 60	plus	ABC17733
MLOC	MLOC_4069.1	1404	2e-24	17 - 76	100	60 / 60	minus	ABC17733
JLOC1	JLOC1_2477.1	1445	8e-25	1328 - 1387	100	60 / 60	plus
Harvest21	ABC17733	785	3e-25	9 - 68	100	60 / 60	minus	ABC17733
Harvest35	U35_21062	785	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_21062 785 Hv_44K_v2
ATACATGAGACTGGAGGCGCTGGAGGCTGACCGGGAATCGATGCGTCAGGCTCTGATGGG
AATGCGCACTGAGAAGGCTCAGCTTATGCTTCTTCGGGAGATAGCGCAACAGCTAGCCAA
AGACGCTGCTCCGGTTGGCACTGGGGTTGGGTTTGTTCCAGCTGTGCACCATTTGCCCAG
AAAGCAAGCCGTGGGGGTTGCAGATACAAGGGTCGGGGAAGACAAGAAGACAGCACCCGG
CGGGACATTCTCGAAGCCCGTGTTGTTTAAGTGGGCCATTGCATTATTTTGCTCTCGAAA
AAAGAAGCCATCACAAAGCAGGTATACATTTGGATTATCAAGTAACAATGTGGGTTTGCT
CATACTCCTGGACAAGTGCCCTCGGATTCAGAAGACTCTCATGAGAAGAAAGTAAAGCCT
GTCTGAAGAAGCTGCTGCTGCTGCCTAATGTAAATAACATAGCTGTTGGTTGGGAAGTCT
GCATCAAATCGCGTTTTATTATTCGAAGGTTGGGCGGAGATGGTGTTGTTTTAATTCTTT
TAGTTGTTGATTTCTCTTTGGCCCCAAGGGCGGGATGGGGATCCTTGTGCGATGATCCAG
AAATTGTCAATGTGGGTTTTTTGGGGGGTCGCTTTTGCTTATATTTCTCGCCAGCAAAGG
CTATATGCTTGTATAGTGCGCGTGTGGACGTGCGGTGCTCGCTGGTTGTTTTTGCTTGCG
TCCAGATTGATGAATGATGAGCTGATGTCAAGGAAATTAGCTGCACATTTGTGCAAAAAA
AAAAA

Homology of Contig U35_21062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g13510.1	480	6e-63
Arabidopsis v10	None