barSeed - Barley Seed Development Database

Probe CUST_10165_PI390587928

Source Contig U35_21068

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10165_PI390587928	Hv_44K_v2	GTACTTCCACTTCGGGGCAGTTTACAGATTCATGCATGCCCGAGATGTTAAATGAAAAAA	619	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	23.052	5.024	1.404	0.337	0.041	0.020
Raw	46707.433	15262.170	4056.620	1464.176	68.313	34.698

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19578.1	920	3e-22	816 - 871	100	56 / 56	plus	ABC19970
JLOC1	JLOC1_13566.1	900	1e-22	796 - 851	100	56 / 56	plus
Harvest21	ABC19970	680	6e-22	615 - 674	97	58 / 60	plus	ABC19970
Harvest35	U35_21068	688	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_21068 688 Hv_44K_v2
GTGGGCCGGACCCCATCACGTCCGACTCACCGCCACCACCTCAGAGGGACTTCTCGGTGC
TCAAGAAGGTTCCGACCGGACCAAACCGAGAGACGTCCGACTCACCGCCACCACCTCAGA
GGGACTTCTCGGTGCTCAGGAGGGTTCCTACCGGACCAAACCCGGAGACGCCCGATTCAC
CGCCACCACCTCAGAGGGACTTCTCGGTGCTCAGGAGGGTTCCTACCGGACCAAACCCGG
AGACGCCCGATTCACCGCCACCACCTCAGAGGGACTTCTCAGTGCTCAGGAGGGTTCCTA
CCGGACCAAACCCGGAGACGCCCGATTCACCGCCGCCACCTCGGAGGGACTTCTCGGTGC
TCAGGAGGGTTCCTACCGGACCAAACCCGGAGACGCCCGATTCACCGCCGCCACCTCAGA
GGGACTTCTCGGTGCTCAGGAGGGTTCCTACCGGACCAAACCCGGAGACGCCCGATTCAC
CGCCGCGACCACCACCAACAGCTCCGGCTTCTCGTGCGTGATGCAACTATCAGCGCAATA
CATGTTGCTAGCATTCAGTGCTAGCTACTAGGGAATAATAGTGTATTGCGTGTTTACTTT
TTGTATATTTGCTTACGGAGTACTTCCACTTCGGGGCAGTTTACAGATTCATGCATGCCC
GAGATGTTAAATGAAAAAAAAAAAAAAA

Homology of Contig U35_21068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None