- Probe CUST_10160_PI390587928
- Source Contig U35_45022
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10160_PI390587928 | Hv_44K_v2 | ACTATGGCTACAGTTTGTCGTGCTTTATCTCTGGAAAGTATGCTAGCATTATTCACTGGA | 418 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.866 | 0.782 | 1.761 | 2.082 | 1.119 | 0.902 |
| Raw | 26.623 | 36.076 | 73.325 | 133.711 | 26.174 | 22.343 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248976.1 | 1889 | 2e-24 | 878 - 937 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44323.1 | 2108 | 2e-24 | 561 - 620 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.6 | 2043 | 2e-24 | 530 - 589 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.4 | 2134 | 2e-24 | 533 - 592 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.7 | 1345 | 2e-24 | 43 - 102 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.3 | 2143 | 2e-24 | 537 - 596 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.2 | 2416 | 2e-24 | 538 - 597 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_44323.5 | 2162 | 2e-24 | 556 - 615 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_28714.9 | 1758 | 8e-25 | 1444 - 1503 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.8 | 2664 | 8e-25 | 1543 - 1602 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.7 | 2623 | 8e-25 | 1502 - 1561 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.6 | 2618 | 8e-25 | 1474 - 1533 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.5 | 2473 | 8e-25 | 1437 - 1496 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.4 | 2455 | 8e-25 | 1442 - 1501 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.3 | 2450 | 8e-25 | 1437 - 1496 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.2 | 2473 | 8e-25 | 1329 - 1388 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28714.1 | 2450 | 8e-25 | 1329 - 1388 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43386 | 481 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45022 | 481 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus |
Contig Sequence (481 bp)
>U35_45022 481 Hv_44K_v2 AGATCTTCTGTCCATGCATTCTGCTACCTCTACAAGATTAGAACGCACACCGAGTATGGA GTCTTTACACAGTTCAGTCAAAGGTGCTGGGTCAGATGAAGAAGACGATGAAGTAAATGT GAAGAATGAAAGTGGTGTTGATGATGGCAAAGTTCTGGGATGGGCTAAGGCACACAATAA TGAACCTCTACAAATTGTTTGTGGTTACCATACTCTTCCTCTGCCACCTCACGGAGGAGA AATTGTCTTCCAACCCCTTGAACATCTCCAGCCTGTTAAATACTCCCGGCCTGGATTATC ATCATTGGGGTTAGGAGACTCAAATTTGGACAATGATTTGAATTCGGCAGAAACAAATCT GGTAATTGTGAATGCCCGTTTGGTCGCTGCAGAAGAAGCTCTTGCATTATCAATATGGAC TATGGCTACAGTTTGTCGTGCTTTATCTCTGGAAAGTATGCTAGCATTATTCACTGGAGT T
Homology of Contig U35_45022 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g75390.1 | 921 | 2e-62 | |
| Arabidopsis v10 | None |