barSeed - Barley Seed Development Database

Probe CUST_10158_PI390587928

Source Contig U35_45025

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10158_PI390587928	Hv_44K_v2	GGTCCAAAGGAAGGAGGCCGTTGACCCGGATAAAGATAGGAAGAAGGAGAAGGCTGCGGC	157	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.241	1.813	0.968	0.744	0.751	0.902
Raw	182.789	203.220	108.686	125.952	44.404	59.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47002.2	345	2e-24	118 - 177	100	60 / 60	minus	None
MLOC	MLOC_47002.1	889	2e-24	653 - 712	100	60 / 60	minus	None
JLOC1	JLOC1_30358.1	573	8e-25	169 - 228	100	60 / 60	plus
Harvest21	ABC43389	217	3e-25	158 - 217	100	60 / 60	plus
Harvest35	U35_45025	217	3e-25	158 - 217	100	60 / 60	plus

Contig Sequence (217 bp)

>U35_45025 217 Hv_44K_v2
CCCCCCTTTCGGGACAGCCGAAAATCACTCGAACCGCAATGGCGCCTCCCCGCGGAGGTG
CTGCTGCGGCCGTTCCCGCCGCACTGGACCTGACCGGCGTGCACATTCTCGAAGCTTCCA
GTGTCCCTCCGGTTCCCAAACGCGGCGGCGGCAATGCGGTCCAAAGGAAGGAGGCCGTTG
ACCCGGATAAAGATAGGAAGAAGGAGAAGGCTGCGGC

Homology of Contig U35_45025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None