barSeed - Barley Seed Development Database

Probe CUST_10154_PI390587928

Source Contig U35_21071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10154_PI390587928	Hv_44K_v2	TAGGCTGTGTAACCTTACATTTGAAGAACAGAAAGCACAGATGACACTATGGTCAATGGC	944	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.192	0.274	0.762	1.420	1.312	1.536
Raw	9.535	20.786	52.696	143.597	49.933	65.037

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12729.1	2343	2e-24	1105 - 1164	100	60 / 60	plus	None
MLOC	MLOC_12729.3	3198	2e-24	1089 - 1148	100	60 / 60	minus	None
MLOC	MLOC_12729.4	2286	2e-24	1086 - 1145	100	60 / 60	minus	None
MLOC	MLOC_12729.5	2091	2e-24	845 - 904	100	60 / 60	minus	None
MLOC	MLOC_12729.2	2369	2e-24	1107 - 1166	100	60 / 60	minus	None
JLOC1	JLOC1_8552.5	2678	8e-25	1200 - 1259	100	60 / 60	plus
JLOC1	JLOC1_8552.4	2629	8e-25	1151 - 1210	100	60 / 60	plus
JLOC1	JLOC1_8552.3	2644	8e-25	1169 - 1228	100	60 / 60	plus
JLOC1	JLOC1_8552.2	2672	8e-25	1197 - 1256	100	60 / 60	plus
JLOC1	JLOC1_8552.1	3501	8e-25	2023 - 2082	100	60 / 60	plus
Harvest21	ABC14864	1004	3e-25	945 - 1004	100	60 / 60	plus
Harvest35	U35_21071	1004	3e-25	945 - 1004	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_21071 1004 Hv_44K_v2
GCACGAGGGAACATANCCAGGGTTACTTCTGAGGCAAATGAACAACATGCTGAGTTACCA
CCAAGAGGATGGAATTCCTATGATTCTTTCTCTTGGACAGTTGACGAAATTGCATACTTG
CAAAATGCAAAGATTTTGGCAGAAAAGTTACTACCACATGGATATCAGTATGCAGTTATT
GATTACCTGTGGTACCGGAGGTATGTTGATGGGGCATATACAGATTCATATGGATTTGAC
AACATTGATGAGTGGGGTCGACCGTTTCCCGACCTCCAAAGATTTCCATCATCCAAAGGT
GATAAAGGGTTCAGTCAAATTGCCAGCAAGGTTCATGAGATGGGTTTGAAATTCGGCATC
CATTTAATGAAAGGAATAAGTACACAGGCTGTTAATGCGAACACACCCATCTTGGACATT
GAGACGGGAAAACCCTATGTAGAGAATGGTCGGCAATGGGCAGCTCGTGATATTGGCCTG
ACCCATAAAACATGTGCATGGATGCCACATGGATTTATGAGTGTAAATACTGATATTGGA
GCTGGACGGGCCTTCTTAAGATCTCTTTACCGACAGTATGCGGATTGGGGTGTTGATTTT
GTGAAGGTTGATTGTATCTTTGGTACTGATTATAGCCCAGAAGAAGTAATAACTATTTCA
CAGCTCCTGCGAGAGCTTGACCGCCCAATAGTATTGTCCATCTCACCAGGAACTGAAGTC
ACTGTACCGTTAGCCGAAAACATCAGTGAACATGTTAATATGTATAGGATAACAGGAGAC
GATTGGGATAACTGGAAAGATGTTAGTTCACATTTTACCGTGTCAAGTGCCTTCGCTGCT
GCGAATAAGATCGGGGCCACCGGATTACGCGGGAAGTCTTGGCCAGATTTAGACATGCTT
CCATTTGGCTGGCTAACTGATCCGGGTGTCAATCAGGGCCCTCATAGGCTGTGTAACCTT
ACATTTGAAGAACAGAAAGCACAGATGACACTATGGTCAATGGC

Homology of Contig U35_21071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g33420.1	650	0.0	protein\|glycosyl hydrolase family protein 27, putative, expressed
Brachypodium v1_2	Bradi2g13530.2	644	0.0
Arabidopsis v10	AT3G26380.1	647	3e-165	Melibiase family protein \| chr3:9660140-9663145 FORWARD LENGTH=647