barSeed - Barley Seed Development Database

Probe CUST_10141_PI390587928

Source Contig U35_33059

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10141_PI390587928	Hv_44K_v2	ATAGAAAATGTGAGGAAGTGGTCTGTCCCTAGAACAGTAAGGAGGTGTGTAGCTTCCTTG	334	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.024	1.515	5.868	0.963	0.419	0.277
Raw	25.369	58.153	195.497	51.400	6.998	4.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54764.1	5791	2e-24	2813 - 2872	100	60 / 60	minus	None
MLOC	MLOC_54764.2	5969	2e-24	2991 - 3050	100	60 / 60	minus	None
MLOC	MLOC_54764.3	5658	2e-24	2934 - 2993	100	60 / 60	minus	None
JLOC1	JLOC1_35268.1	5625	8e-25	2764 - 2823	100	60 / 60	plus
Harvest35	U35_33059	423	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_33059 423 Hv_44K_v2
TGGTGAACATACAAAACAACATTCACAACCCACACAGGTCACTAGGAATTCTTGGTCACG
TCATTCGGCCTCGCTGCTGCACCCCAACTTTCATTGGAGCAATTGCTTGCACTCGTGACC
ACTGCTGTGGGAATGTGTCATTCTCTTCTTCGATGACATATTGGTTTACAGTAAAATACT
GGAACATCATGTGGCACACATTCGTCAAGTGCTGCAATTACTCAGAAGGGACCATTGGCA
AGCTAAACAATCCAAATGTGCTTTTGGGCATAGGCAGATTGTGTACTTGGGGCATGCTAT
CATTGAACATGGTGTTGCCACCGATCCAGCAAAGATAGAAAATGTGAGGAAGTGGTCTGT
CCCTAGAACAGTAAGGAGGTGTGTAGCTTCCTTGGATTGGCTGGCTATGACCGGAAATTC
GTC

Homology of Contig U35_33059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None