- Probe CUST_10141_PI390587928
- Source Contig U35_33059
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_10141_PI390587928 | Hv_44K_v2 | ATAGAAAATGTGAGGAAGTGGTCTGTCCCTAGAACAGTAAGGAGGTGTGTAGCTTCCTTG | 334 | GeneList: darkgreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.024 | 1.515 | 5.868 | 0.963 | 0.419 | 0.277 |
Raw | 25.369 | 58.153 | 195.497 | 51.400 | 6.998 | 4.923 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_54764.1 | 5791 | 2e-24 | 2813 - 2872 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_54764.2 | 5969 | 2e-24 | 2991 - 3050 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_54764.3 | 5658 | 2e-24 | 2934 - 2993 | 100 | 60 / 60 | minus | None |
JLOC1 | JLOC1_35268.1 | 5625 | 8e-25 | 2764 - 2823 | 100 | 60 / 60 | plus | |
Harvest35 | U35_33059 | 423 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus |
Contig Sequence (423 bp)
>U35_33059 423 Hv_44K_v2 TGGTGAACATACAAAACAACATTCACAACCCACACAGGTCACTAGGAATTCTTGGTCACG TCATTCGGCCTCGCTGCTGCACCCCAACTTTCATTGGAGCAATTGCTTGCACTCGTGACC ACTGCTGTGGGAATGTGTCATTCTCTTCTTCGATGACATATTGGTTTACAGTAAAATACT GGAACATCATGTGGCACACATTCGTCAAGTGCTGCAATTACTCAGAAGGGACCATTGGCA AGCTAAACAATCCAAATGTGCTTTTGGGCATAGGCAGATTGTGTACTTGGGGCATGCTAT CATTGAACATGGTGTTGCCACCGATCCAGCAAAGATAGAAAATGTGAGGAAGTGGTCTGT CCCTAGAACAGTAAGGAGGTGTGTAGCTTCCTTGGATTGGCTGGCTATGACCGGAAATTC GTC
Homology of Contig U35_33059 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |