barSeed - Barley Seed Development Database

Probe CUST_1013_PI390587928

Source Contig U35_17801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1013_PI390587928	Hv_44K_v2	GTCAAGCTTGTGCTTTGGTGATACCTCAGTTTCGGAATAATATGTTTATTTTGTACCAAA	1160	GeneList: blue MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.749	1.429	1.070	0.945	0.400	0.409
Raw	2173.783	2791.321	1838.780	2575.995	388.431	423.788

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80687.1	2213	2e-23	68 - 125	100	58 / 58	minus	ABC11836 ABC51485
MLOC	AK252898.1	2029	7e-23	1973 - 2029	100	57 / 57	plus	ABC11836 ABC51485
MLOC	MLOC_80687.2	2017	7e-23	1 - 57	100	57 / 57	minus	ABC11836 ABC51485
JLOC1	JLOC1_53727.2	2120	1e-23	1944 - 2001	100	58 / 58	plus
JLOC1	JLOC1_53727.1	2187	1e-23	2011 - 2068	100	58 / 58	plus
Harvest21	ABC11836	1092	4e-24	991 - 1048	100	58 / 58	plus	ABC11836
Harvest35	U35_17801	1266	3e-25	1161 - 1220	100	60 / 60	plus

Contig Sequence (1266 bp)

>U35_17801 1266 Hv_44K_v2
GAGATGTTAGTTTGTCAGAATCACCTGATTGTCAGAAGTGCATGCGGCTTATACTGAGTC
TTTGCTTATCTGAGGGATTCGATACTTTCCCAACTCTGCTCTGCACTGATGGTTGCTCAA
TGATTGATCGTCGGATGGGTATATATGGTTATCCTATTGAGATCCAAGCTCTCTTCTACA
TGGCATTAAGATGTGCTCTCCAAATGCTCAAGCCGGATGGTGAAGGGAAAGACTTCATAG
AGAAGATAGGGCAGCGACTACATGCATTAACCTATCACATGCGAAATTACTTCTGGCTTG
ATTTCCCACATCTAAATAACATATATAGATACAAAACAGAAGAGTACTCCCACACTGCTG
TGAACAAATTCAATGTCATCCCGGATTCAATTCCTGATTGGGTGTTTGATTTCATGCCAT
GCAAGGGAGGCTACTTTCTTGGCAATGTCAGCCCTGCTATGATGGACTTCAGGTGGTTTG
CTCTTGGAAACTGTATTGCCATTATATCATCTCTAGCTACTCCGGAGCAGTCATCGGCAA
TAATGGACCTGATCGAGGAGAGGTGGGATGAGCTAGTGGGCGAGGTGCCTCTGAAGATAG
TATATCCTGCACTTGAGAACCATGAATGGAGAATAATTACTGGCTGCGACCCCAAGAATA
CCCGGTGGAGTTATCATAATGGAGGATCATGGCCAGTTCTTCTATGGCTGCTGACAGCAG
CCTGCATCAAGACCGGGCGGCCACAAATGGCGAAGCGCGCCATCGAGCTCTCCGAGGCAA
GACTCCTCAAGGACGGCTGGCCCGAGTACTACGATGGCAAGCTGGGAAAGTTCGTCGGCA
AGCAGGCCAGGAAGTTCCAGACATGGTCCATTGCTGGCTACCTCGTCGCGCGGATGATGC
TGGAGGACCCTTCAACGCTCCTGATGATCACAATGGAGGAGGACCGGCCGGTGAAGCCGA
CAATGAGGCGGTCGGCGTCATGGAATGCCTGAAGAAAGGTTGGGTGGTTGTTCCTCCAAA
AAAGAATTTACTTGCCAAGGGTTGAACAGAAAAAAGCGTCCGGAGTTGGTTGTAATTGTA
CTCTGTCAGTTTCGACAGAAGTGTATACCGTAGATGCAACTAGAAGTCGCACTACATTTT
CCTTTTGTCGAAAACAGCAAGTCAAGCTTGTGCTTTGGTGATACCTCAGTTTCGGAATAA
TATGTTTATTTTGTACCAAAAAAAAAAAAAAAAAACCCCCTCATTTTATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_17801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07440.3	549	protein\|plant neutral invertase domain containing protein, expressed
Brachypodium v1_2	Bradi4g24470.1	553
Arabidopsis v10	AT1G22650.1	534	Plant neutral invertase family protein \| chr1:8013529-8015647 REVERSE LENGTH=534