barSeed - Barley Seed Development Database

Probe CUST_10133_PI390587928

Source Contig U35_21082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10133_PI390587928	Hv_44K_v2	CTGGGGGGAAGGAATGATACTGCATCACTATCACTTCATGCTCCATAAATGTTTAACAAA	1333	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.193	1.591	1.210	0.867	0.406	0.426
Raw	1275.630	2661.744	1764.123	1985.315	328.712	373.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55071.4	4149	7e-23	3021 - 3081	98	60 / 61	minus	ABC10142 ABC15138
MLOC	MLOC_55071.2	3530	7e-23	2659 - 2719	98	60 / 61	minus	ABC10142 ABC15138
MLOC	MLOC_55071.3	3435	7e-23	2662 - 2722	98	60 / 61	minus	ABC10142 ABC15138
JLOC1	JLOC1_35495.1	4123	4e-23	1069 - 1129	98	60 / 61	plus
JLOC1	JLOC1_35494.3	3502	4e-23	2640 - 2700	98	60 / 61	minus
JLOC1	JLOC1_35494.2	3528	4e-23	2666 - 2726	98	60 / 61	minus
JLOC1	JLOC1_35494.1	3548	4e-23	2686 - 2746	98	60 / 61	minus
Harvest21	ABC15138	1402	3e-25	1334 - 1393	100	60 / 60	plus	ABC15138
Harvest35	U35_21082	1402	3e-25	1334 - 1393	100	60 / 60	plus

Contig Sequence (1402 bp)

>U35_21082 1402 Hv_44K_v2
ATCCTAGGACCATGGCTAGCAGACTCAATATTATTTTGTACATGTTCTGGCTACTGAGTA
CTGACTCTGTGTCTCTTTAGGTTGTAAAAGAACTTCTTGCTGGATCTACTTCAAAACCAG
TAAATACTGATTATAAGGATGTCCGTGAATCAATTCTTCAGGTGTTGTCCTCTTTGAGTT
CTGTTGAGTCCTACCTTGAGTTCTTCTCGATCAGATCTGATCAGGAATGTCAGGAACTTG
AAGAAGCTGAGGTTGAATTGGAGCTTATTAAAAATGAGAAAGCAGTTCTGAAATTTGCCG
GACATCCCCAGGATACTGTGGTTCCAGGCATGTTATCATATTACAAGGATAGTAGTGAAG
TTAATACACAGCTTCAGCAGATCCGTGAAGATATACGGTCCCTAGAACGGTCCAAGCTCA
GGGAGGATATTATAGCACGCCGACAGAAGAAATTGCTTATCAGACATACCCGTGAAAAGT
ACTTGGAAGAGACGAGTTGCAAGGAAATGGAGCTTATGCAAGAGCTTGATAGGGAAAGAA
CACTTGAGATGGAGCGTGACATCGAAAGGCAGCGACAGCTGGATCTTGAGCGTGCAAAGT
CCAGGGAACTGCAATATAACCTCGATATGGAAAGGGAGAAACAAACTCAGAGAGAGCTTC
AACGTGAGCTGGAGCAGGTCGAGTTGGGGCGGTCATCGAGGCGGGAGTTCTCAACCAACC
CCAGCAGCCGGGCGAGGGAGAGGTACCGTGAAAGGGATAACGGTAGAGGCGCACAGCAGG
AGGGAAGCCGCGGCCAAGGCCACGAGGGTCAATCAACGGTCGTGATGGGTGGTGCGTCAA
GGCCATCGTCGTTTCCTACGATACTGCAATCCCGCGACCGTGGCAGCGATGGCGGCTACG
AGGAGAACGCGGAGGGAAGCAGGGATTCCGGTGGCGATACCAGCAGCATGGGAGACCCGG
AGTTCGACGGGCCGGGGTCGGGCTCGAGGCACGGGACACGAGCGGGCAGCAGCAAGTCGT
CGAGGCAGGTCATGGAGCGCAGAGAGCGAGACGGTAGACGGGAAGGTAAATGGGAGCGGA
AGCAATGAAGGCTACTCTTCTACTCAGTAGTCCTTTTTGGTCAGTTATTCAATGCATCTC
TTGCTCCAGCAACCGGCCACTACTGTAACCAAAGCAAATTCTGCGTCTTGTATCATGTAC
TACTAGTACTTCAAAGCTGCAGTGTTAGTGTTACATAGACAAGGTGGTTTATATAACTGG
AAAACAGAGAGATCGGGGGTGAGGTGCACCTTGGCTGCAGGTGACAGCAACACACAACTA
ACTGATCGCTGCACTGGGGGGAAGGAATGATACTGCATCACTATCACTTCATGCTCCATA
AATGTTTAACAAANNAATATAT

Homology of Contig U35_21082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g43075.1	1718	4e-86	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None