barSeed - Barley Seed Development Database

Probe CUST_10130_PI390587928

Source Contig U35_21085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10130_PI390587928	Hv_44K_v2	CAAACATTGTATTTATATTCTTTTCCATGTACTCGACATTCAACGTCTCCCCTTCTGAAA	659	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63156.1	600	2e-24	16 - 75	100	60 / 60	minus	ABC13735
MLOC	MLOC_63155.1	4837	2e-24	259 - 318	100	60 / 60	minus	ABC13735 ABC16595
JLOC1	JLOC1_41363.4	1020	8e-25	802 - 861	100	60 / 60	plus
JLOC1	JLOC1_41363.3	935	8e-25	717 - 776	100	60 / 60	plus
JLOC1	JLOC1_41363.2	2145	8e-25	1927 - 1986	100	60 / 60	plus
JLOC1	JLOC1_41363.1	1128	8e-25	910 - 969	100	60 / 60	plus
Harvest21	ABC13735	760	3e-25	43 - 102	100	60 / 60	minus	ABC13735
Harvest35	U35_21085	748	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (748 bp)

>U35_21085 748 Hv_44K_v2
GAAAAGGAGCGCAGCGCAGGAGAGGCGGTCGCGGGCAGCGAGAATGGCGTGCTCTCCCTC
TCCCTCTCCCCGGCTGCTCCACCGGGCGTCTGCTTCCTCTTCTCCGTTGCTCTGGTCGGG
CATGTGCGCTCGGCTCCCTCCACGTTCGGATGGACCATCCAATACAAGCAATCCGGACAT
ACATTGTATGGAAGAAGCCATGTGACGAGCTTCCTGGCTCTTGCTAGTGCAGATGCACCA
CAAGGCAAAGGAAGTTCAGGTCAGAAAGTGATAATGGTTGATCCACTGGAAGCTAAGCGC
TTAGCAGTGAAACAAATGCAAGAAATTCGTGCCAGAGATAAACTGAAGAAACGCCGTCAA
GCAGAAGCTATTAACGGCGCATTGGCGGTGATAGGATTGACTGCTGCATTGGTATTGGAA
GGTCGGACAGGAAAGGGTATCTTGGGACAGCTAGCAGGATATCTGGCGGCTTTATCTAGT
TTATTTGGGCAATAACTGTCACCCTTGGAAGAATTTTGTAACTTCCGTCGACCAGGAGAG
CTCCAGATCTTACTTGCTGGATCCAACCAATTTTCATATCTAATCCAAGCTGGATGTACA
ATAACGCTTAGATTTGCACGTGAAATGATCTACTCGGCTATTTTTCCTGGACTGAGAATC
AAACATTGTATTTATATTCTTTTCCATGTACTCGACATTCAACGTCTCCCCTTCTGAAAA
ATTGTACCCCCTCTCTAAACTAAATAAA

Homology of Contig U35_21085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39730.2	157	5e-61	protein\|expressed protein
Brachypodium v1_2	Bradi3g48470.2	151	1e-71
Arabidopsis v10	None