- Probe CUST_10125_PI390587928
- Source Contig U35_33065
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10125_PI390587928 | Hv_44K_v2 | AGGATAGATGCAACCTCTGCATGTAATGATATCACGTTCTCTGTATCCCACATAAGTTCA | 43 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.210 | 3.403 | 1.218 | 0.658 | 0.901 | 0.806 |
| Raw | 23.683 | 37.712 | 12.459 | 10.869 | 3.251 | 4.235 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37615.1 | 2152 | 7e-23 | 1936 - 1995 | 98 | 59 / 60 | plus | ABC07771 ABC07772 |
| JLOC1 | JLOC1_24364.2 | 2100 | 4e-23 | 1877 - 1936 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_24364.1 | 2166 | 4e-23 | 1943 - 2002 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC07771 | 1016 | 1e-23 | 808 - 867 | 98 | 59 / 60 | plus | ABC07771 |
| Harvest35 | U35_33065 | 454 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_16627 | 1913 | 1e-23 | 1705 - 1764 | 98 | 59 / 60 | plus |
Contig Sequence (454 bp)
>U35_33065 454 Hv_44K_v2 TATTTTTGCAAGGTACCCACAGCACCATGTCTGCACAAGCATATGAACTTATGTGGGATA CAGAGAACGTGATATCATTACATGCAGAGGTTGCATCTATCCTGTATCCGGGGCCATCTT CCGATGATGACCACCCGTGAGGACCTTCACTCGCCGTTTCTGTGCCAAATATGGCCGTGT ATGTGTAGATTCAAATGGTAAAGAACACCTCAGTGGAAGGATATGTTCCGATGCATTTTT AGGTTTTCTTTGCCTGTACCTTTTTGAGGTATTTCTTGTGAAGTTTCAGAGCTCCAGCAC AGGCTTTCTTCGCATCTAAGTTCCCGTTTACATCATTCAATATCTGAAATGAAACAAATG CAGGAGTTGCAGATACATAACACATGCTTATATACAAACATATAATATGGGCTTAAATTT TATTTTAGTTTGACGAGCCGTGCTTAAAATTGGC
Homology of Contig U35_33065 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |