barSeed - Barley Seed Development Database

Probe CUST_10116_PI390587928

Source Contig U35_21090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10116_PI390587928	Hv_44K_v2	GCTAGCTCTTGTCTTCCTGAAGCAATAGATTTTCTTCGAGGTCAAATAGCTGAATTCATA	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361939	1404	2e-24	684 - 743	100	60 / 60	plus	ABC17934
MLOC	MLOC_22948.1	1738	2e-24	934 - 993	100	60 / 60	plus	ABC19255
MLOC	MLOC_22948.2	1276	2e-24	472 - 531	100	60 / 60	plus	ABC19255
JLOC1	JLOC1_15881.1	1735	8e-25	935 - 994	100	60 / 60	plus
Harvest21	ABC16961	676	3e-25	615 - 674	100	60 / 60	plus
Harvest35	U35_21090	677	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_21090 677 Hv_44K_v2
CCGCGTACCCACAGCACAGAGAGAGAGAGCGAGCGCGGGTTTGCCCTCCCATGGAGAAGG
GGGACGGGCCCGCCCTCCAGCCTCTGCTGTGCCTCGCCTGGCTCGCCGCCACGCTCCCCA
TCGCCGCCGCCGCGCTGCCCATCCCCGCGGCCGCCGGCGGCCGCTTCCTACACAGCCTCC
TCGCCGCCTTCTCCTCCCGCGGCAAGACCGTCAGGCCGTCCTCCTCCTCCAAGGCGAAGT
TCACAGTTCCGCAGAAGTACTTCTTGCATTTCTATGTGGTGGGAGTGGCGGTGACAACAA
GCTTGCTGCTTGCAATATGCTTCTATGCATATATGAAAATGACACCGCTGTTGGCAGAGC
CATCGAGTTACTCCACAATCGCTAGCCATCTTATTGGGTCAAATTCGTTCTCTTTTGGCA
GTGTCCTGTCGCGCACCATGGAACACAAGTATCGTGTCTGGCGGACTGTCTTTGTACTTC
TATTGATGGAAATTCAGGTGCTGAGACGCCTGTATGAGACTGAAAATGTGTTTCACTACA
GCCCTACAGCTCGGATGCACATTGTAGGATACCTGACAGGTCTATTCTATTACACGGCTG
CACCTTTATCTCTCGCTAGCTCTTGTCTTCCTGAAGCAATAGATTTTCTTCGAGGTCAAA
TAGCTGAATTCATAGTA

Homology of Contig U35_21090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48750.1	355	3e-100	protein\|3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g19010.1	356	3e-109
Arabidopsis v10	None