barSeed - Barley Seed Development Database

Probe CUST_10107_PI390587928

Source Contig U35_48606

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10107_PI390587928	Hv_44K_v2	CCGTGTGGTTGTGTGGCTACTTTCAAAAGTACGGAGGTCAATGGAATTTCCTATAAGAAG	3	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.007	1.834	1.351	1.435	0.496	0.530
Raw	16.655	48.558	30.130	51.457	5.466	6.323

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68151.3	2031	9e-22	1899 - 1960	97	60 / 62	plus	None
MLOC	MLOC_68151.1	3033	9e-22	2901 - 2962	97	60 / 62	plus	None
Harvest21	ABC50533	632	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48606	632	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (632 bp)

>U35_48606 632 Hv_44K_v2
TGTCTTCTTATAGGAAATTCCATTGACCTCCGTACTTTTGAAAGTAGCCACACAACCACA
CGGTTTGCAGATTACAGAACCACCAAAAACACACACAAAATAGCAGCCGAATAGCCACCA
GAGGTTCACTCTCATGTGCTGGAAAGTTCAAACTAACGCTTCTCATTGTGATGAATGATG
TCGACCATCATCGTAAGCTTCCTCTGGTCTGTCATCAGCTGGAACAGGCAGATATCTTTG
ACTTGCAGATGATTGTGGCAGGCAAACTTGTGCCAATCTCCCCTGAGCACCTTTGCGCCG
CCATCCCTCGGGTGCACCTCGACTTCCCATGACTTGCTCCTCTGTGCTGTTACGAGTGTC
ACAGTCTGCTCTCCAGCGGGGAGATACTCATCAGCATACTCCCTGCAAATGTTTACCGAG
TACATGCTGTTGTTGCCAACACTGCTCTTGTTCATTATGGACACGTAAATGGGAACTTTA
GACTGAAGGGCACGAACTCTCTTGTCGACATTCATCTTCTGCTCCCTGGTCAGACATGCG
GTGGATGATATTATGTAGGGACGTTTCCGAGGCCTTCTAGATTTATCAGAGTCAACAGGC
CCCTGACGTGCTTCATGACCATGGCTGTGAAC

Homology of Contig U35_48606 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g14530.1	569	6e-59
Arabidopsis v10	None