barSeed - Barley Seed Development Database

Probe CUST_10103_PI390587928

Source Contig U35_48608

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10103_PI390587928	Hv_44K_v2	TATCTGTAGCACCAACTGTGCCTGCTACTAAGTAGGTTTGGACCTATGTAGGAATCTAAA	0	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.146	1.335	1.331	1.024	0.359	0.584
Raw	667.574	1228.652	1074.553	1295.888	157.218	282.305

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50535	687	3e-25	1 - 60	100	60 / 60	minus	ABC50535
Harvest21	ABC02809	1033	6e-22	839 - 899	97	59 / 61	plus	ABC02809
Harvest35	U35_48608	687	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_15141	594	6e-22	400 - 460	97	59 / 61	plus

Contig Sequence (687 bp)

>U35_48608 687 Hv_44K_v2
TTTAGATTCCTACATAGGTCCAAACCTACTTAGTAGCAGGCACAGTTGGTGCTACAGATA
ATTTGCCAGTCAAGCGTGTCCGTGTACGAATCAGATTATACTGTACGACGACTCCAAGTC
CTATTTAGATTCCTACAGAAGCCCAAAACCTACTCAGGGACAGCCACGGTTGGTTCTACA
AATACTATCTCCAGGTGATTGTTATCTTACACAATCCCAAGCCTTTGGTTCAATCAACAT
CTCAATCTCACACATCGCCCTGTAGTACCTGCCTTCGTCAAGCCAGCTTTACAACAGTTA
TTCTTGGGCTAGCACACCATGGTCCTGCCCATGTTCAAATTTGGTAGTTAATAGACCAAT
ATATCCCTCCAGTAGCATATCTGTGAGTCCTTCCAGCTGAGACCATAGATTAGATTTCAT
TGGCATGCTTGCAGATCCTGATTCTCTCAAAAGCTCCATCACAGATGATGCCAGACTCCT
GATATTTTTGCTTCTATAATTTGCTTTGCAAGGTCATACAGGGATCCAAGAAGTTCATCT
CTCCGTTCACAGTATTCTTGGGCTAGCACACCATGGTCCTGAGAAATCCATCTATTTGTT
GGCTAGCTTTGGTTTTCGAATAGCACTGATACTGCTTAATCGTTGTTGCTGGTGCCACCT
GAGATGCTTAGAAGCTTGGCAGCATCT

Homology of Contig U35_48608 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None