- Probe CUST_100_PI390587928
- Source Contig U35_36899
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_100_PI390587928 | Hv_44K_v2 | AAGATTGTGATGTTTCACCCGTATCATCGAAGCGCTTATGGTCAAGTAACTGCTTGGATG | 331 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.320 | 0.979 | 1.654 | 1.341 | 0.718 | 0.878 |
| Raw | 38.330 | 37.341 | 66.045 | 72.656 | 15.960 | 20.941 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251343.1 | 5287 | 2e-24 | 3306 - 3365 | 100 | 60 / 60 | plus | ABC11842 |
| Harvest21 | ABC32361 | 418 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36899 | 418 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus |
Contig Sequence (418 bp)
>U35_36899 418 Hv_44K_v2 GGTTACAAACATGATCTTCAGAAGGTCACATCAAATAATTGCCTTCAACACTGCTATCGG ACAGACACATCTCGTTTCAGCAAAGATCTTTCTGTGACCGGAAAAGTTGATGTTGAGGAA GATGATTCTCAGTATGAGGATGGGGAGCTTAGGGAATCTGGTGACCGTTTTTGGGCCGAT GACATTTATGAAGTTAAATGTGCTGATTATCAGGTATCAGATTACAAGGATGAAAAAGCT GCATCAGAGATTCATCATGTACCTGTTGGCTCTGTTCCAAACAATATGGTTGTGCCAGTT GCTAATTACAATGGAACATTATCCAGGAAGGAAGATTGTGATGTTTCACCCGTATCATCG AAGCGCTTATGGTCAAGTAACTGCTTGGATGGTGGATCTGNAATGATGTGTTCTGCAA
Homology of Contig U35_36899 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g36437.1 | 1659 | 9e-63 | |
| Arabidopsis v10 | None |