barSeed - Barley Seed Development Database

Probe CUST_10097_PI390587928

Source Contig U35_24654

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10097_PI390587928	Hv_44K_v2	GATGGATGGATTGTGGGACTGGTAACTGGAAATAAAATAAGGTTGTCAAGTGTTTGAAAA	626	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362753	1985	7e-23	1769 - 1825	100	57 / 57	plus	ABC09863
MLOC	MLOC_11635.1	856	7e-23	622 - 678	100	57 / 57	plus	ABC09863
JLOC1	JLOC1_7727.1	942	4e-23	637 - 693	100	57 / 57	plus
Harvest35	U35_24654	699	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_24654 699 Hv_44K_v2
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCCCAATTCCGCACGAGGC
CAGGCTGAACGCGAGCCTGGCGGCGTACGGGGACGAAGCGATACGCGGAGCGGCGGCCGC
GTGGCAGGCGGCGCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGGTGACGAT
GGGCAGCTCCAACCGGTTCCCGATGTACGAGGGCAACGACTTCGGGTGGGGCCGCCCCCT
GGCGGTGCGCAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGGGCCG
CTCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCGGACACCATGGCGGCGCT
GCTCCGCGACGACGGGTTCATGCGCTACGTGTCGTGCCCGGCGCACCTGTTGTGATCGAT
GCCTTGCCGCGTCCGTGCGTCCGTGCGTGCGCGCGCGCGCGCGCAAGTAGGGCCGCCATG
GCATGTCGTCAAGCTGCCTTCCCCGGATGTGTGCACTGTGCAGGAGGATGAATCCATTTC
GGGAAGTGGTGGTGCGCGCGGGCGGACCGTGGCATGGTGCTCGTAGTGCCTGGATTGACT
AGCTTAGGCAGCGACGTGCTGAAGGAGATGGATGGATTGTGGGACTGGTAACTGGAAATA
AAATAAGGTTGTCAAGTGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63480.1	484	6e-55	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi2g55250.1	498	1e-61
Arabidopsis v10	None