barSeed - Barley Seed Development Database

Probe CUST_10080_PI390587928

Source Contig U35_36638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10080_PI390587928	Hv_44K_v2	CCATAACAAGGAGAATGTACCATCCAAAAATGTGCAAAACACAAAGCCGAGGAGCAGCAA	15	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.457	2.627	1.214	0.781	0.397	0.362
Raw	349.222	574.988	235.292	221.073	42.376	40.827

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4896.3	3506	7e-23	901 - 960	98	59 / 60	minus	ABC31792
MLOC	MLOC_4896.4	3507	7e-23	902 - 961	98	59 / 60	minus	ABC31792
MLOC	MLOC_4896.2	4395	7e-23	1374 - 1433	98	59 / 60	minus	ABC31792
MLOC	MLOC_4896.1	4819	7e-23	1486 - 1545	98	59 / 60	minus	ABC31792
JLOC1	JLOC1_3104.1	4707	4e-23	3268 - 3327	98	59 / 60	plus
Harvest21	ABC31792	596	3e-25	16 - 75	100	60 / 60	minus	ABC31792
Harvest35	U35_36638	596	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (596 bp)

>U35_36638 596 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCTGCTCCTCGGCTTTGTGTTTTGCACATTTTTGGATGGTACA
TTCTCCTTGTTATGGTCAGTAAAACCATCCATTACATCTGCAACTTTTTCCTTTTTCCTG
CTCCTGGGCTTTGTGTTTTGTGCATCTTTGGATGGTACATTCTCCTTGCTATGGTCAGCA
GAGCCATCCATTGCATCTGCAACCTTTTTCTTTTTGCTACTCCTCGGCTTTGAGTTTTGC
GCATCTTCCAATATGTCCTCAAAGGAATCTTTGCAAAATGATCCAACTTCATTTGCTGTA
CCATCCTTATTAGCACTCTGGGTATCCTTATCCACCATTGCCTTGTCAGCATTTGTGGAG
CACTCTGCAGCCCTCTTTATCGTGTCAACTTCAGCCTCAGATGGGAAGACACCACCAGTG
TTGCAAGGTTCACTACCAGATACATGCTGTTGTGTGGCAGAAATTTTCCTCTTTGCAACT
GCCTTACGCACTCTGTTCTTTGGTACTCTATCAGGAGCGCATGTTTCATGGTTATTAGCA
CTTGCAGTACTTAAAAGCTTTTCGGTGGAAGCTTGGGGAGCTGCATCACAAAAATC

Homology of Contig U35_36638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None