barSeed - Barley Seed Development Database

Probe CUST_10072_PI390587928

Source Contig U35_12685

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10072_PI390587928	Hv_44K_v2	GATACAGTAAGATACATGCCTATGGAAACATTATTTCATGTTCTTGAAGTTTGGAGCATC	1115	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.006	1.042	1.579	1.492	0.476	0.488
Raw	27.119	45.103	58.396	85.863	9.778	10.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63844.9	2457	2e-24	1547 - 1606	100	60 / 60	plus	ABC19577
MLOC	MLOC_63844.1	2155	2e-24	1542 - 1601	100	60 / 60	plus	None
MLOC	MLOC_63844.5	2495	2e-24	1555 - 1614	100	60 / 60	plus	ABC19577
MLOC	MLOC_63844.6	2546	2e-24	1606 - 1665	100	60 / 60	plus	ABC19577
MLOC	MLOC_63844.8	2039	2e-24	1487 - 1546	100	60 / 60	plus	None
MLOC	MLOC_63844.7	2519	2e-24	1592 - 1651	100	60 / 60	plus	ABC19577
MLOC	MLOC_63844.2	2578	2e-24	1617 - 1676	100	60 / 60	plus	ABC19577
MLOC	MLOC_63844.3	2566	2e-24	1601 - 1660	100	60 / 60	plus	ABC19577
JLOC1	JLOC1_41859.2	2572	8e-25	1529 - 1588	100	60 / 60	plus
JLOC1	JLOC1_41859.1	2561	8e-25	1518 - 1577	100	60 / 60	plus
Harvest21	ABC22554	1175	3e-25	1116 - 1175	100	60 / 60	plus
Harvest35	U35_12685	1175	3e-25	1116 - 1175	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_12685 1175 Hv_44K_v2
TCCTTCTCCCTATCCGCTCTATCATGAGACCCTGCCCTGCTGAAATCCAGCAGCCGTACC
CTCTCTTAACCGATGTGATCTGCAGAAAGATACCAACGGCATTTGTTCTCACTAAGAATG
CAGAATTTGTTGATGATGTCACGACATTTCGGGATCTCATGGATCATCTGGAGTCTAATG
GATGTCACCTGGCCAAGCTCTCGGCAACAGAATTATCAGCAAAGAATGGAGTCGGTGGCT
GCTTAAGGAGCTTGTTGAGGCAGCTGCTGTCAGATGTTCCAGATGTAGCGGATGTATCTG
CACTCGCATCTTGGTACTGCAAAGGCGACAATTATGATCAACCTATCATTATCATAATTG
ATGATTTAGAGCAATGCTCCGGTGATGTCCTGGGAGAGCTTGTGATGACGCTGAGTGAGT
GGGTAATTAAGATTCCAATCTTCTTTGTAATGGGGATAGCAACTACCCTTGACGCACCAA
GGAAACTACTCTCATCGGAAGCTCTTCAAAGATTAGATCCCTGTAAGCTCACGTTGGGGT
CTCCCTCTGATAGAATGAATGCCCTTGTGGAGGCCATCCTTGTTAAACCATGCGCTGGTT
TCTGCATCAGTCACGAAGTTGCAGTCTTCCTCAGAAATTACTTTTTCAGACACGATGGGA
CAATAACATCTTTCATTAGTGCTCTCAAGCTTGCATGCAGTAAGCACTTCTCTGTCGAAC
CTTTGAGCTTCTTGTGCATGGGAATGCTTGAAGAGGATTCTGAGAACTTTTGGCATGATA
AATTTGGTGCACTGCCTGTAGGAATTCAGAAACAAGCTTTTGGTTTACCCTCATGCACAA
GGGAATATAACTCAATCAAGCCTGGCAACAATTTGGTAGAAGGGTTGTCTGAGCTGATGA
AGCTGCAAAAGGATTGGAGTTCTGTTCTCTCGTGCCTGTATGAAGCTGGAAGACATGGCA
AAGTGCAACTTTTAGATATTTTCTGCGAGGCAATCAATCCAGATCTGCATACTCGGAATG
ATTCAAATAATGAACTGCTTATGTCTAAACTGACAAGTGGGAATCTATCAAGCGGAAAAT
CAGGTGCTGGTAGAAGATGTATAGCTCAGGCATTGGATACAGTAAGATACATGCCTATGG
AAACATTATTTCATGTTCTTGAAGTTTGGAGCATC

Homology of Contig U35_12685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26280.1	719	0.0	protein\|ORC3 - Putative origin recognition complex subunit 3, expressed
Brachypodium v1_2	Bradi4g23097.1	707	0.0
Arabidopsis v10	AT5G16690.1	734	4e-104	\| Symbols: ORC3, ATORC3 \| origin recognition complex subunit 3 \| chr5:5474410-5479878 FORWARD LENGTH=734