- Probe CUST_10071_PI390587928
- Source Contig U35_48614
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_10071_PI390587928 | Hv_44K_v2 | TGAGGTGTTATCATATTTCACCTTATTAGGATCGAAGTTCTTAAAGCTAGCTTTCGAGTG | 4 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.463 | 0.638 | 0.952 | 1.465 | 0.843 | 1.312 |
Raw | 16.674 | 36.741 | 47.276 | 115.736 | 22.744 | 38.636 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_65553.1 | 1896 | 7e-23 | 306 - 362 | 100 | 57 / 57 | minus | None |
JLOC1 | JLOC1_43142.1 | 1543 | 4e-23 | 1423 - 1479 | 100 | 57 / 57 | plus | |
Harvest21 | ABC50553 | 522 | 3e-25 | 5 - 64 | 100 | 60 / 60 | minus | |
Harvest35 | U35_48614 | 522 | 3e-25 | 5 - 64 | 100 | 60 / 60 | minus |
Contig Sequence (522 bp)
>U35_48614 522 Hv_44K_v2 TTTACACTCGAAAGCTAGCTTTAAGAACTTCGATCCTAATAAGGTGAAATATGATAACAC CTCACAGCAAAAACATGAACTACATACCTAAATGGCATGTTAGGCAGCAAAAAACCTCTC ACTGGCCTGTAGAAGTTTAAAACCTATCCCCACTACACAAACCGCCACATATTCTATGCA CTACAGTTTTGTGACATCTTGGCTAAATAGATAAACAATCAACATGATACTGTGACTGTG AGAGATCGTTCCTAAACCTAATTAGAGCTAGGAAAAGTGGCACCAAGATCTGATGTTGAT GCACTTTATTTATAACTTCTGCAAATACCAAACAAAGGAAGCCAGTGTACATACTTCTTT GGAACCTCATGCAAATCCAGCTTCCCTCATATCTTTTATGGTTGCCTCAAGTCTTTGATG CAAGTCAAACCTCCGAAATCCAGCAACTAATATATCGTAGCTAGAGCGGGTGAGCATGTA CAAGCTTTGAATGCGGTTTAAAAACATCTCCAACCTATCAAA
Homology of Contig U35_48614 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |