barSeed - Barley Seed Development Database

Probe CUST_10057_PI390587928

Source Contig U35_50930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10057_PI390587928	Hv_44K_v2	AAGCTTACAAGACAAAAAGTTGCTATAAAGATTCTGAACCGCAGTCAAATGGGAGCTATG	107	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.575	0.493	0.718	1.763	2.792	3.116
Raw	3.202	3.991	8.714	28.421	18.472	22.367

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4424.5	2751	2e-24	254 - 313	100	60 / 60	plus	ABC06240 ABC53017
MLOC	MLOC_4424.1	2737	2e-24	523 - 582	100	60 / 60	plus	ABC06240 ABC06241 ABC53017
MLOC	MLOC_4424.4	1251	2e-24	279 - 338	100	60 / 60	plus	ABC06240 ABC53017
MLOC	MLOC_4424.2	2129	2e-24	513 - 572	100	60 / 60	plus	ABC06240 ABC06241 ABC53017
MLOC	MLOC_4424.3	3099	2e-24	513 - 572	100	60 / 60	plus	ABC06240 ABC06241 ABC53017
JLOC1	JLOC1_2752.3	2100	8e-25	364 - 423	100	60 / 60	plus
JLOC1	JLOC1_2752.2	2151	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_2752.1	3029	8e-25	432 - 491	100	60 / 60	plus
Harvest21	ABC53017	310	3e-25	108 - 167	100	60 / 60	plus	ABC53017
Harvest35	U35_50930	310	3e-25	108 - 167	100	60 / 60	plus

Contig Sequence (310 bp)

>U35_50930 310 Hv_44K_v2
TGGATGGGAACGCCAGAGGAAGCGGACATTCTGACGCATTAAAGAACTACAATCTGGGCA
AAACATTAGGTCTAGGCACATTTGGAAAAGTGATAATTGCAGAGCATAAGCTTACAAGAC
AAAAAGTTGCTATAAAGATTCTGAACCGCAGTCAAATGGGAGCTATGGAAATGGAAGAGA
AACAAATAGAGAAATCAAGATATTGAGGTTGTTCATTCACTTCATTCATCCTCATATCAT
CCGGGTTTATGAGGCCATTGAGACACCTAAGGATATATTTGTTGTGATGGAATATTGCAA
CAATGGGGAT

Homology of Contig U35_50930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None