- Probe CUST_10056_PI390587928
- Source Contig U35_50931
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10056_PI390587928 | Hv_44K_v2 | TGAGTGACTGAACAGTCATCTCCTTGCTGTACTTTAGCCGATGTGTATGTGTGATGTGTC | 600 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.147 | 2.186 | 1.058 | 0.945 | 0.497 | 0.980 |
| Raw | 637.725 | 1844.046 | 827.217 | 1269.777 | 205.539 | 468.332 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_25021.1 | 1068 | 8e-25 | 696 - 755 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53018 | 660 | 3e-25 | 601 - 660 | 100 | 60 / 60 | plus | ABC53018 |
| Harvest21 | ABC29739 | 247 | 3e-25 | 130 - 189 | 100 | 60 / 60 | plus | ABC29739 |
| Harvest21 | ABC00698 | 982 | 3e-25 | 615 - 674 | 100 | 60 / 60 | plus | ABC00698 |
| Harvest35 | U35_50931 | 660 | 3e-25 | 601 - 660 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35493 | 421 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34078 | 493 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_388 | 978 | 3e-25 | 622 - 681 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_144 | 1329 | 3e-25 | 871 - 930 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48107 | 469 | 1e-23 | 323 - 382 | 98 | 59 / 60 | minus |
Contig Sequence (660 bp)
>U35_50931 660 Hv_44K_v2 GCCGGCTTAGCTCACCACCACTACTATTGCTAGCTTGTGATCGAAATGGCTCGCGCTGCA GCTACTCAGCTCGTGCTGGTCGCCATGGTGGCCGCTATGCTCCTCGTAGCCACCGACGCG GCCATCTCCTGCGGTCAGGTGAGCTCTGCCTTGAGCCCTTGCATCTCCTATGCCCGCGGC AACGGCGCCAAACCGCCTGTGGCCTGCTGCAGCGGCGTCAAGAGACTGGCCGGCGCAGCC CAGAGCACCGCTGACAAGCAAGCGGCGTGCAGGTGCCTCAAGAGCCTCGCTACCAGCATC AAGGGCATCAACATGGGCAAGGTCTCCGGCGTGCCCGGCAAGTGCGGCGTCAGCGTGCCC TTCCCCATCAGCATGTCCACCGACTGCAACAAGGTCCACTAGCAGGGATCAGATACTCCT TCCTACGTGCATGCATGGACGCGCTTGTGTGGAGCTTAATATCTACGTTGATGGAGTGCT CATACGTACGATATTGAGCAATGGAAAATAAAATAAAAGAGTATGCCTATGTCTGTACCT TGCACACACACTGTGTGTGTGCGCATATATATTTACGCGGCATGCATGCACGCGTCCGTA TGAGTGACTGAACAGTCATCTCCTTGCTGTACTTTAGCCGATGTGTATGTGTGATGTGTC
Homology of Contig U35_50931 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |