barSeed - Barley Seed Development Database

Probe CUST_10044_PI390587928

Source Contig U35_36644

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10044_PI390587928	Hv_44K_v2	ACCGGGAGAAAGTCAAATAAAGATGTGGTGGAGCCAGGGGAGGTTACTCCACTGGGAAAA	438	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.871	1.656	1.099	0.559	0.550	0.340
Raw	113.050	131.495	90.089	66.079	24.036	16.732

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51413.1	5824	2e-24	4812 - 4871	100	60 / 60	minus	None
JLOC1	JLOC1_32843.5	5210	8e-25	860 - 919	100	60 / 60	plus
JLOC1	JLOC1_32843.4	5679	8e-25	860 - 919	100	60 / 60	plus
JLOC1	JLOC1_32843.3	5637	8e-25	828 - 887	100	60 / 60	plus
JLOC1	JLOC1_32843.2	5486	8e-25	774 - 833	100	60 / 60	plus
JLOC1	JLOC1_32843.1	5475	8e-25	773 - 832	100	60 / 60	plus
Harvest21	ABC31811	498	3e-25	439 - 498	100	60 / 60	plus
Harvest35	U35_36644	498	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_36644 498 Hv_44K_v2
GGCTCACGACACCCTCCCAGGTTTTCCATGGGAGATGGAGGAGTCGCGTGCGCCGTCCCG
CCTCAGCGTGCAGTGGAGGGATTCCGTGCCGACTCCTTCGTGAGGGGAGAAGCGATGCCA
GACAAGGGGGAGAAAGCGCACGGCCACCACCACCACCACCACCACCATCACCACCATAAG
CACTATTCGGCTTCAGCTCCCGACCTCGAGGAAGGGGAGCTGCTGCTGAATGGAGAGGCA
GACAACAGACGGGACTTGGACAGGACCATACCTCCCAAGAAATGGCGCAAGTTGCTGCCT
TCCTCGCCAGCTGCAGAATTGGAGCCGGGGGAGATTGTAGGCGTGCAATCAGAGCCAACA
AGGAAGACAAGGAGGAACGTGGAGCTTGAAAAGGCTGAGCTTGTGCCTGTGACGCAGAGG
AAAGGCAACTCTGACAAGACCGGGAGAAAGTCAAATAAAGATGTGGTGGAGCCAGGGGAG
GTTACTCCACTGGGAAAA

Homology of Contig U35_36644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None