barSeed - Barley Seed Development Database

Probe CUST_10043_PI390587928

Source Contig U35_50938

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10043_PI390587928	Hv_44K_v2	CACCTTGTTAAGCTCAGACTTGTTTAAGGAATATCTATCATTGTTGTTTCAGAAAGAACC	1513	GeneList: darkolivegreen MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.019	0.025	0.720	2.233	1.616	2.613
Raw	3.047	9.119	266.141	1219.667	325.646	568.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6489.2	2376	8e-25	2275 - 2334	100	60 / 60	plus
JLOC1	JLOC1_6489.1	1699	8e-25	1598 - 1657	100	60 / 60	plus
Harvest21	ABC53029	1664	3e-25	1514 - 1573	100	60 / 60	plus	ABC53029
Harvest35	U35_50938	1664	3e-25	1514 - 1573	100	60 / 60	plus

Contig Sequence (1664 bp)

>U35_50938 1664 Hv_44K_v2
CCCTCAACCCATCTCATTCCATACACAACCCATGGGTTCGCCATAGCCAAAACCCATGCT
GTGCTCGCCGCGTGATTGAGCCTCTCCACCGTCCTCTCTTCGCTGGTTCCCACGGGGTTA
ACCATACGATTTCTCGCTCAATTTTGTTCTAATCAATCACCTTGCCCAAATTCCATTCCG
GAAACGTGCAATGGAGCCCGTGTTCTCACTGCTGGAGGAGGCGATGCCCGAGCCCGACTC
TAACCCCGGTCGGACCTCGCCGCCGCAGCTGCAGGCACACGTGCTCGCCGGAGGAGTCAG
AGGAGCAGGAGGAGTGGGCGTCGGTGAGATCGTTGGCGATGGCGCGACAGAATTGTGCTT
CGACAAGTCCATGGAGGAGCCGTCGCTGCTCAACGTCCCCACGGAGCCAGTGGCGAACCC
GGACGCCTCGACGCTTCACCCTAATCCCACGGCGGAGGTGAGCCGCAAGAGGCGGTACGA
CGTTCATGAGGAGGAGGAGGTGGTGGGGGTCATCCCCACGCCGCCTGCGGCGGGCGCGGT
GCTGGACCCCGTGGGCTACAACGCGATGCTGAGACGGAAGTTGGACGCGCATCTCGCCGC
CGTCGCCATGTGGAGGACTACTCGAGGAATTTGCCGACAAAGCTCCCATGACAATAGAGC
ATCACAAAATCCAGATTCTATCCAAGGCTCAGAAAATCACACTGGAGATGCTAGTGTGCA
ACAACTTAGCTCTTCCTCATGGGAGCCATCACCATCGGATGATGATATGGAAGGGGAGGC
ACAAACAATTGGAACTATGAATATTAGTGCAGAGAAAGTGAACAAAAGAAAAGAATCTAA
CCGGGATTCGGCGAGACGCTCAAGGAGTAGAAAAGCAGCTCATACGAAGGAACTAGAGGA
GCAAGTCTCACTATTAAGAGTTGCAAATAACTCCTTGATGAGACATCTAGCAGATGTAAG
TCACAGATACGTCAATACCGCTATTGACAATAGGGTATTGAAGGCAAATGTTGAAACCCT
AGAAGCAAAGGTAAAGATGGCCGAGGAAACTATGAAGAGAATTACATCCACCAACAATTT
CCCCCAAGCAATATCTGGCATGTCATCTCTCAGGACCCATTTCAGTGGTTCCCAATTGGA
TGGCATCTTTGATACTACATTGCCAACCCAAAACATGTCACTTAACCATTTTTCCACTAC
AGCAACAAATTTTGATGTGAGCAGCAACTACATCCCCGAGCTAGCTCCGGCATACCAGAT
CCATGATCAAATATCTTCGCTACATACGCAACCTATGCCATGCTTGGATCATCACCCACG
GAGGATGCCCTTTGGTATTCCAAGTACATTGGTGCCTACCCCACAACGGGAATCCACTAC
ATTGGATTCAAATGAAATAGGCAACATGGTGATGCAGTAGGAATTATGTGAGAGACCTGA
GCCGGAATTATTATTTTAAAATAAATATTGTCGTTGTTCTTGGTGGCCATTGGGGGTATT
TGTAATGGTTTCTCACCTTGTTAAGCTCAGACTTGTTTAAGGAATATCTATCATTGTTGT
TTCAGAAAGAACCTATACATTGTTGGTATCCCATAACTAATAAAATATATCAAAGGTTAT
TGGACAATAAAGTCATGTGGTTGAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_50938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55450.1	422	3e-65
Arabidopsis v10	None