- Probe CUST_10014_PI390587928
- Source Contig U35_36654
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10014_PI390587928 | Hv_44K_v2 | ACTTGATTTTCTGAAACCTGAAGTGGATGTTTCTCCAATCGTACCTGCCCTCAAGAATTT | 624 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.618 | 0.779 | 1.203 | 1.651 | 1.015 | 0.885 |
| Raw | 19.832 | 38.201 | 52.980 | 115.141 | 24.772 | 23.562 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376921 | 2222 | 2e-24 | 1327 - 1386 | 100 | 60 / 60 | plus | ABC03711 ABC31841 |
| MLOC | MLOC_14062.3 | 1645 | 2e-24 | 799 - 858 | 100 | 60 / 60 | plus | ABC03711 ABC31841 |
| MLOC | MLOC_14062.1 | 1953 | 2e-24 | 945 - 1004 | 100 | 60 / 60 | plus | ABC03711 ABC31841 |
| MLOC | MLOC_14062.2 | 1945 | 2e-24 | 945 - 1004 | 100 | 60 / 60 | plus | ABC03711 ABC31841 |
| JLOC1 | JLOC1_9574.1 | 1856 | 8e-25 | 874 - 933 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31840 | 707 | 3e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03711 | 2309 | 3e-25 | 1258 - 1317 | 100 | 60 / 60 | plus | ABC03711 |
| Harvest35 | U35_36654 | 707 | 3e-25 | 625 - 684 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15685 | 2309 | 3e-25 | 1258 - 1317 | 100 | 60 / 60 | plus |
Contig Sequence (707 bp)
>U35_36654 707 Hv_44K_v2 GGCGGCGGAGGTGCTCTCGAAGCTGGGGGCATTCGGGCTAACGCTGCTGCTCGACCAGCA GAGGGGGGAGTCGTCCTCATCAGCGAAGAGGCGTGCCAGGGCGGTCGAGCTGCGAACCAT ACTGACAAGGCTTGGCCCGACGTTCGTCAAGATTGGACAGGGGTTGTCCACGCGGCCTGA TCTCTGCCCGACTGAGTATCTTGAGGAGCTCTCCGAGCTGCAGGAAGGCCAAAACGCACG AAGGTTTAAAAAGTTATATGCTGACAAGCAAGACATATTGGTCCCTGATATATTTTGGGA TTACACAAGTGCAAAGGTACTGACAATGGAATGGATTGAGGGTGTAAAACTTAATCAACA AGCTGCCATTGAAGGCCAAGGCTTGAAGGTCTTGGACTTGGTGAACATTGGTATCCAGTG TAGCCTAAGGCAGCTACTAGAGTATGGTTACTTTCATGCTGACCCGCATCCTGGTAATAT TTTGGCAACACCTGAAGGGAAGCTTGCTTTTCTTGATTTTGGCATGATGAGTGAAACCCC AGAGGATGCAAGGGTAGCCATCATAGGGCATGTCGTTCACATGGTCAATCGGGATTATGA AGCGATGGCTCGTGATTATTATGCACTTGATTTTCTGAAACCTGAAGTGGATGTTTCTCC AATCGTACCTGCCCTCAAGAATTTTTTTGATGATGCTTTGGATTCAA
Homology of Contig U35_36654 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g25840.1 | 521 | 8e-108 | protein| ELMO/CED-12 family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g30567.1 | 508 | 3e-110 | |
| Arabidopsis v10 | AT1G79600.1 | 711 | 2e-95 | Protein kinase superfamily protein | chr1:29950105-29952516 REVERSE LENGTH=711 |