- Probe CUST_1000_PI390587928
- Source Contig U35_17814
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1000_PI390587928 | Hv_44K_v2 | TAATCGCTCGTATGTAGCCGCCTGATTAATAAAGAGATGTTTACTTGGTTTTCCAAAAAA | 466 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.257 | 2.071 | 1.082 | 0.916 | 0.326 | 0.417 |
| Raw | 27.148 | 68.743 | 33.213 | 48.400 | 4.326 | 6.880 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56313.2 | 8146 | 9e-22 | 6882 - 6936 | 100 | 55 / 55 | plus | ABC08567 ABC08568 ABC16071 ABC24936 |
| MLOC | MLOC_56313.3 | 5068 | 9e-22 | 3804 - 3858 | 100 | 55 / 55 | plus | ABC08567 ABC08568 ABC16071 ABC24936 |
| MLOC | AK249084.1 | 571 | 3e-21 | 518 - 571 | 100 | 54 / 54 | plus | ABC08567 ABC08568 |
| JLOC1 | JLOC1_36411.14 | 1431 | 5e-22 | 1226 - 1280 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.13 | 1059 | 5e-22 | 854 - 908 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.10 | 3107 | 5e-22 | 2902 - 2956 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.9 | 1259 | 5e-22 | 1054 - 1108 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.8 | 3861 | 5e-22 | 3656 - 3710 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.7 | 4039 | 5e-22 | 3834 - 3888 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.6 | 1090 | 5e-22 | 885 - 939 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.5 | 4427 | 5e-22 | 4222 - 4276 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.4 | 4791 | 5e-22 | 4586 - 4640 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.3 | 5089 | 5e-22 | 4884 - 4938 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.2 | 6843 | 5e-22 | 6638 - 6692 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_36411.1 | 7505 | 5e-22 | 7300 - 7354 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC08567 | 535 | 6e-22 | 10 - 69 | 97 | 58 / 60 | minus | ABC08567 |
| Harvest21 | ABC08566 | 564 | 8e-21 | 513 - 564 | 100 | 52 / 52 | plus | |
| Harvest35 | U35_17814 | 535 | 3e-25 | 467 - 526 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17813 | 757 | 8e-21 | 513 - 567 | 98 | 54 / 55 | plus |
Contig Sequence (535 bp)
>U35_17814 535 Hv_44K_v2 GCACGAGGCTTTCCTCCCTCTGCCTCGAGAAGCCGGCTAGCCGGAGAGGGAACGTACGTG GTCGCCGGCGTCGGAGAAGAGGAAGGAAGAGGGTGAGGGAGGATGTCGGACTGGGGGCCG GTGGTGATCGCGGTGGTGCTGTTCGTGCTGCTGTCCCCGGGGCTGCTGCTGCAGCTCCCC GGGAAGCACCACTTCGTGGAGTTCGGCAACATGCACACCAGCGCCATGGCCATCCTCGTC CACGCCATCATCTACTTCGCCCTCATCGCTCTCTTTGTCATCGTCATCGGCGTGCACATC ACCACGGACTAGTCCGATCGATCCCCCGGCCAGCTCCAATTAAGCTGCTCTCCTTCCTCT TCTGCTTCTTTCTTTACTTTTGTTTTTGGCTGACTCTTGCCTCTGTTCTTGCTGGTGCAG CAACCACTGTAGTATGTGATGATGTTTCTTTGTTGCCCTGCGTAATTAATCGCTCGTATG TAGCCGCCTGATTAATAAAGAGATGTTTACTTGGTTTTCCAAAAAAAAAAAAAAA
Homology of Contig U35_17814 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |