barSeed - Barley Seed Development Database

Probe CUST_10007_PI390587928

Source Contig U35_48632

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10007_PI390587928	Hv_44K_v2	CAATCATTTTTGCTGATGTGTGTGATGACAAAGGAGTGTTTGCCTAACAGAAGCAAAATT	-1	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.995	1.819	1.450	0.983	0.395	0.515
Raw	528.325	1550.001	1053.788	1132.202	157.208	223.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374930	3548	9e-22	3484 - 3545	97	60 / 62	plus	None
JLOC1	JLOC1_25445.1	3365	6e-21	3228 - 3287	97	58 / 60	plus
Harvest21	ABC50588	598	1e-23	4 - 64	98	60 / 61	minus
Harvest35	U35_48632	598	1e-23	4 - 64	98	60 / 61	minus

Contig Sequence (598 bp)

>U35_48632 598 Hv_44K_v2
TCCAATTTTGCTNTCTGTTAGGCAAACACTCCTTTGTCATCACACACATCAGCAAAAATG
ATTGGTTCTCTTCTCAGTCCTACATATCAGGATAGACAACTAGTTGGCCTCTTACAACAG
TGCAAGAAACATCACAAGAGATACGGATCATATGGGTGGAATGTGATCACTTCTACCCGA
GAGAAACCATAAATGGTGCCTATAAAACTAAGATCCGGCTAAAAGGTGAACACTACTGCC
GCTCTCTACCCCGAGCATCAGTTGATCAGGTCCAATCATCTCATCGAGTCTGTCGATTAT
GCGAGGAAGGATGACGTAGCCCTGAGTAAACAATATACGACTCCAAACCATCATCGGAGC
TTGCTTCATTTTGTTCCTGTTGGAAACTTGGTGGCATCGCTGGTTCACCCATTAATCCAT
TTGGTAAGCCACCAGTTGACATCATCTTCTGCATAGCACTCATTGCATCCGTGACTCTTG
CCAAGTCCTCCTGCAGCTTTTTCTGGCTTTCCTCCATCACTATCACCTTCTTCCTTAGAG
CGGCTGCCTCATCTTCGGCCTTTCTTTTAGCCCTTGCAGCTTCCAAGACTGCATTTTC

Homology of Contig U35_48632 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None