barSeed - Barley Seed Development Database

Probe CUST_10004_PI390587928

Source Contig U35_48637

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10004_PI390587928	Hv_44K_v2	GGGTCAAAGATCTATAGGCTGGGATTACTGTTGTCACTGCCCTATAGATTTGGGTTGTAT	110	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74634.1	256	2e-24	132 - 191	100	60 / 60	minus	ABC15701 ABC31966 ABC36951
MLOC	MLOC_72807.1	167	2e-24	40 - 99	100	60 / 60	minus	ABC15701 ABC31966 ABC36951
MLOC	AK364404	3071	7e-23	2881 - 2940	98	59 / 60	plus	ABC15701 ABC22231 ABC31461 ABC31966 ABC36951
MLOC	MLOC_55409.1	405	7e-23	318 - 377	98	59 / 60	plus	ABC15701 ABC22231 ABC31966 ABC36951
MLOC	MLOC_41031.1	501	3e-22	446 - 501	100	56 / 56	plus	ABC15701 ABC22231 ABC31966 ABC36951
MLOC	MLOC_78888.1	258	3e-21	98 - 157	97	58 / 60	minus	ABC15701 ABC22231 ABC31966 ABC36951
MLOC	MLOC_27321.1	267	3e-21	43 - 102	97	58 / 60	minus	ABC15701 ABC22231 ABC31966 ABC36951
MLOC	MLOC_27137.1	651	3e-21	27 - 86	97	58 / 60	minus	ABC15701 ABC22231 ABC31966 ABC36951
JLOC1	JLOC1_49753.1	240	8e-25	130 - 189	100	60 / 60	minus
JLOC1	JLOC1_48449.1	180	8e-25	71 - 130	100	60 / 60	minus
JLOC1	JLOC1_26786.1	501	1e-22	446 - 501	100	56 / 56	plus
Harvest21	ABC50593	500	3e-25	111 - 170	100	60 / 60	minus
Harvest21	ABC31966	497	1e-23	149 - 208	98	59 / 60	minus	ABC31966
Harvest21	ABC15701	815	1e-23	149 - 208	98	59 / 60	minus	ABC15701
Harvest21	ABC15185	885	1e-23	107 - 166	98	59 / 60	minus
Harvest21	ABC36951	557	6e-22	107 - 166	97	58 / 60	minus	ABC36951
Harvest35	U35_48637	500	3e-25	111 - 170	100	60 / 60	minus
Harvest35	U35_14698	927	1e-23	720 - 779	98	59 / 60	plus
Harvest35	U35_7755	815	1e-23	608 - 667	98	59 / 60	plus
Harvest35	U35_41766	557	6e-22	107 - 166	97	58 / 60	minus

Contig Sequence (500 bp)

>U35_48637 500 Hv_44K_v2
ATATCAAAATTCATAGCATCCATACATCCAAAATTCATAGCATCCATATATACATATAGT
TCCATAGCATCCATACATACATAGATCCATAGCAAATATAATACACAACGATACAACCCA
AATCTATAGGGCAGTGACAACAGTAATCCCAGCCTATAGATCTTTGACCCCATCCAGAAA
ATGGGTTCAATTTCATTGCTTGTTCTTTGGATACCTACCAGGCTTGTTCAGATCGTTCTA
TGCCACTTCATATGCTGCTCAAAGGTCAAAAGTGTCGGAAATGACCGAGGACCAGCATGA
TTCTTATCAAACATGACATGTTAGATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACT
GCACTTATTGTCATAATAACTATATCAGCTCCCAGTGCAGCAGTCTCTGATCATTCTACA
CCTTCAATAATAGGTGAATCCATTTATCATCTTTTACATGATTGATTTCCAATGCCTTGA
AATGTTTCGATACCAAAACT

Homology of Contig U35_48637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None