- Probe CUST_10001_PI390587928
- Source Contig U35_24680
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10001_PI390587928 | Hv_44K_v2 | TGATGTAGACAAGGATGTGTATGATCAGGGGCCTAGCTATATTTTTTGTGAGCGAAAAAA | 292 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.964 | 1.520 | 1.162 | 0.884 | 0.336 | 0.464 |
| Raw | 4694.680 | 5719.587 | 3812.777 | 4579.783 | 612.518 | 915.431 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_24680 | 364 | 3e-25 | 293 - 352 | 100 | 60 / 60 | plus |
Contig Sequence (364 bp)
>U35_24680 364 Hv_44K_v2 CAAAACCAAGGCTAGTTAACTAAGCGGGATCGACATGGACAGACATAGATCCCCAGCTTC TCCGAAGCTGAAGTTGGCCAAGAACCTCTCCGCAAACCCTTCAACCCTTCGGTGAGGGTA CGATTTTGCTTGTAGTGGTACCATGATTTCTTTTCCCTTTCCCCAGCTTTTACCTGTGAG ACAGCGACTAACCTCTTTTTGTCGATTTTTTCCCTGCCCAAAGTTCTCTATCTATTTATA ATCTCAACGATGAGCAGGCTTTCAACTATTGTTTTATATGAACGCTAAAGACTGATGTAG ACAAGGATGTGTATGATCAGGGGCCTAGCTATATTTTTTGTGAGCGAAAAAAAAAAAAAA AAAA
Homology of Contig U35_24680 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |